View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18606_low_19 (Length: 239)
Name: NF18606_low_19
Description: NF18606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18606_low_19 |
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| [»] chr5 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 37850412 - 37850174
Alignment:
| Q |
1 |
cccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattgacctcaattaatgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37850412 |
cccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattgacctcaattaatgaaa |
37850313 |
T |
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| Q |
101 |
caagaccaccaagggcatctatgcttcctgttaaattgttcaaggatatatctagactttgcaattgctgcagtcctatccagtcaattcctgaaggaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37850312 |
caagaccaccaagggcatctatgcttcctgttaaattgttcaaggatatatctagactttgcaattgctgcagtcctatccagtcaattcctgaaggaat |
37850213 |
T |
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| Q |
201 |
gtcacctttcaatccattagcactaagattcaatccata |
239 |
Q |
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| T |
37850212 |
gtcacctttcaatccattagcactaagattcaatccata |
37850174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 37837033 - 37836801
Alignment:
| Q |
1 |
cccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattgacctcaattaatgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37837033 |
cccatgaatgatgatggtgaggaattcaataacctcattagacctgttggtacagatccattgaagagattgaaagaaatattgacctcaattaatgaaa |
37836934 |
T |
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| Q |
101 |
caagaccaccaagggcatctatgcttcctgttaaattgttcaaggatatatctagactttgcaattgctgcagtcctatccagtcaattcctgaaggaat |
200 |
Q |
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| T |
37836933 |
caagacctccaagagcatctatgcttcctgttaaattgtttaaggatatatctagactttgca------gcagtccgagtaaaccaatttccgaaggaat |
37836840 |
T |
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| Q |
201 |
gtcacctttcaatccattagcactaagattcaatccata |
239 |
Q |
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| T |
37836839 |
gccacctgtcaatccattaccactcagattcagtccata |
37836801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 37842652 - 37842490
Alignment:
| Q |
1 |
cccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattgacctcaattaatgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
37842652 |
cccatgaatgatgatggtgaggaattcaataacttcattagacctgttggtacagaaccattgaagagattgtgagaaatattgacctcaattaatgaaa |
37842553 |
T |
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| Q |
101 |
caagaccaccaagggcatctatgcttcctgttaaattgttcaaggatatatctagactttgca |
163 |
Q |
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| T |
37842552 |
caagacttccaagtgcgtctatgcttcccgtcaaattgttcaaggatatatccagactttgca |
37842490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 37831329 - 37831097
Alignment:
| Q |
1 |
cccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattgacctcaattaatgaaa |
100 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||||| |||||| ||||| ||| |||| |||| |
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| T |
37831329 |
cccatgaatgatgatggtgaggaattcagtaacttcattagacctgttggtacagaaccattgaagagattgtaagaaacattgatatcagttaacgaaa |
37831230 |
T |
|
| Q |
101 |
caagaccaccaagggcatctatgcttcctgttaaattgttcaaggatatatctagactttgcaattgctgcagtcctatccagtcaattcctgaaggaat |
200 |
Q |
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|||||| |||| |||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | ||||| |||||||||| |
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| T |
37831229 |
caagactttcaagagcatatatgcttcctgttaaattgttcaaggatatatccagactttgca------gcagtcctagcttcccaatttctgaaggaat |
37831136 |
T |
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| Q |
201 |
gtcacctttcaatccattagcactaagattcaatccata |
239 |
Q |
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| ||| | |||||||||| ||| |||||||||||||| |
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| T |
37831135 |
gctgcctgttaatccattagaactcagattcaatccata |
37831097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 28089522 - 28089388
Alignment:
| Q |
1 |
cccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattgacctcaattaatgaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| || ||||||| |||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
28089522 |
cccatgaatgatgatggtgaggaattcaataaactcattagagctaatggtacaaaaccattgaagagattgtaagaaatattgacctcaattaatgaaa |
28089423 |
T |
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| Q |
101 |
caagaccaccaagggcatctatgcttcctgttaaa |
135 |
Q |
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||||| | ||||| ||||| ||| |||||| |||| |
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| T |
28089422 |
caagatctccaagagcatcgatgattcctgctaaa |
28089388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 36865780 - 36865548
Alignment:
| Q |
1 |
cccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattgacctcaattaatgaaa |
100 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| | ||||||| | ||||||||||||||| ||| |||||| || |||||||||||||||||||||||| |
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| T |
36865780 |
cccatgaacgatgacggtgaggaattcaataacctaattagacgtgttggtacagaaccattgaaaagattgtaataaatattgacctcaattaatgaaa |
36865681 |
T |
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| Q |
101 |
caagaccaccaagggcatctatgcttcctgttaaattgttcaaggatatatctagactttgcaattgctgcagtcctatccagtcaattcctgaaggaat |
200 |
Q |
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||||||| |||| ||||||||||||||||| |||||||||||||||||||| | ||||||| ||||||||| | ||||| |||||||||| |
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| T |
36865680 |
caagaccttcaagagcatctatgcttcctgtcaaattgttcaaggatatatccaagctttgca------gcagtcctagcatcccaatttctgaaggaat |
36865587 |
T |
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| Q |
201 |
gtcacctttcaatccattagcactaagattcaatccata |
239 |
Q |
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||||| ||||||||||| |||| |||||||||||||| |
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| T |
36865586 |
accacctgtcaatccattatcactcagattcaatccata |
36865548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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