View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18606_low_20 (Length: 236)
Name: NF18606_low_20
Description: NF18606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18606_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37849775 - 37849553
Alignment:
| Q |
1 |
ccactgattttgttcttactcatgtccatgtatttcaggttcaaattactttcaaaatcgggaagagacccggtgaaattattttcattgagaaacaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37849775 |
ccactgattttgttcttactcatgtccatgtatttcaggttcaaattactttcaaaatcgggaagagacccggtgaaattattttcattgagaaacaacc |
37849676 |
T |
|
| Q |
101 |
tcatcagagtttcacatcttcctacatcagaaggtatattgccttgaagttgattgattcccatgtttagcactaacaaatgctttccaaaacaaagatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| |
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| T |
37849675 |
tcatcagagtttcacatcttcctacatcagaaggtatattgccttgaagttgattgattcccatgtttagcactagcaaatgctttccaaagcaaatatt |
37849576 |
T |
|
| Q |
201 |
tggtgggatattaccactgaact |
223 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
37849575 |
gggtgggatattaccactgaact |
37849553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37836400 - 37836178
Alignment:
| Q |
1 |
ccactgattttgttcttactcatgtccatgtatttcaggttcaaattactttcaaaatcgggaagagacccggtgaaattattttcattgagaaacaacc |
100 |
Q |
| |
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|||||||| |||||||| |||| ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||| |
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| T |
37836400 |
ccactgatattgttcttgctcaagtccatgtagttcaggttcaaattactctcaaaatcaggaagagacccggtgaaattattttcattgataatcaacc |
37836301 |
T |
|
| Q |
101 |
tcatcagagtttcacatcttcctacatcagaaggtatattgccttgaagttgattgattcccatgtttagcactaacaaatgctttccaaaacaaagatt |
200 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| || |||||| |||||||||||||||| |||||||| |
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| T |
37836300 |
tcatcagagtttcacatcttcctagatcagaaggtatgccaccttgaagttgattgattcccatattgagcactgacaaatgctttccaaagcaaagatt |
37836201 |
T |
|
| Q |
201 |
tggtgggatattaccactgaact |
223 |
Q |
| |
|
|||||||||||||| ||||||| |
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| T |
37836200 |
gggtgggatattaccgctgaact |
37836178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 37830675 - 37830474
Alignment:
| Q |
22 |
atgtccatgtatttcaggttcaaattactttcaaaatcgggaagagacccggtgaaattattttcattgagaaacaacctcatcagagtttcacatcttc |
121 |
Q |
| |
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|||||||||||||||||||| | ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| | |||||| ||||||||| |
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| T |
37830675 |
atgtccatgtatttcaggttaagattacttgcaaaatcgggaagcaacccggtgaaattattttgattgagaaacaacctccttagagttgcacatcttc |
37830576 |
T |
|
| Q |
122 |
ctacatcagaaggtatattgccttgaagttgattgattcccatgtttagcactaacaaatgctttccaaaacaaagatttggtgggatattaccactgaa |
221 |
Q |
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||| |||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37830575 |
ctagatcagaaggtatgccaccttgtagttgattgattcccatgttgagctctaacaaatgctttccaaaacaaagatttggtgggatattaccactgaa |
37830476 |
T |
|
| Q |
222 |
ct |
223 |
Q |
| |
|
|| |
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|
| T |
37830475 |
ct |
37830474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 37842016 - 37841797
Alignment:
| Q |
4 |
ctgattttgttcttactcatgtccatgtatttcaggttcaaattactttcaaaatcgggaagagacccggtgaaattattttcattgagaaacaacctca |
103 |
Q |
| |
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||||| |||||||| || |||||||||||||||||||| | ||||||| ||||||| ||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
37842016 |
ctgatattgttcttgcttatgtccatgtatttcaggttaagattacttgcaaaatcaggaagcgacccggtgaaattattttgattgagaaacaacctcc |
37841917 |
T |
|
| Q |
104 |
tcagagtttcacatcttcctacatcagaaggtatattgccttgaagttgattgattcccatgtttagcactaacaaatgctttccaaaacaaagatttgg |
203 |
Q |
| |
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| |||||| | |||||||| | |||||||||||| ||||| ||||||||||||||||| || ||| ||||||||||||||||||| |||||||| || |
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| T |
37841916 |
ttagagttgcgcatcttccaagatcagaaggtatgccaccttgtagttgattgattcccatattgagctctaacaaatgctttccaaagcaaagattggg |
37841817 |
T |
|
| Q |
204 |
tgggatattaccactgaact |
223 |
Q |
| |
|
||||||||| ||| |||||| |
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| T |
37841816 |
tgggatattgccattgaact |
37841797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 37821587 - 37821519
Alignment:
| Q |
120 |
tcctacatcagaaggtatattgccttgaagttgattgattcccatgtttagcactaacaaatgctttcc |
188 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
37821587 |
tcctagatcagaaggtatgccaccttgaagttgattgattcccatgttgagctctaacaaatgctttcc |
37821519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 36865141 - 36864941
Alignment:
| Q |
11 |
tgttcttactcatgtccatgtatttcaggttcaaattactttcaaaatcgggaagagacccggtgaaattattttcattgagaaacaacctcatcagagt |
110 |
Q |
| |
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||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
36865141 |
tgttcttgctcatgtccatgtatttcaggttcatattactttcaaaatcgggaagagacccggtgaaattattttcattgaaaaaca-----atcagagt |
36865047 |
T |
|
| Q |
111 |
ttcacatcttcctacatcagaaggtatattgccttgaagttgattgattcccatgtttagcactaacaaatgctttccaaaacaaagatttggtgggata |
210 |
Q |
| |
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|||||||||||||| ||||||||| || |||||||||||||| ||||| | ||| || ||||||||||||||||||| |||||||||||||||||| |
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|
| T |
36865046 |
ttcacatcttcctatatcagaaggaatgccaccttgaagttgattaattccgacgttgaggtctaacaaatgctttccaaagcaaagatttggtgggata |
36864947 |
T |
|
| Q |
211 |
ttacca |
216 |
Q |
| |
|
|||||| |
|
|
| T |
36864946 |
ttacca |
36864941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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