View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18606_low_5 (Length: 457)

Name: NF18606_low_5
Description: NF18606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18606_low_5
NF18606_low_5
[»] chr7 (26 HSPs)
chr7 (18-309)||(41353976-41354267)
chr7 (314-443)||(38472851-38472980)
chr7 (314-443)||(46438235-46438364)
chr7 (314-441)||(24227147-24227274)
chr7 (370-443)||(48851253-48851326)
chr7 (370-443)||(22155169-22155242)
chr7 (370-443)||(22211084-22211157)
chr7 (370-443)||(38550227-38550300)
chr7 (370-443)||(45360605-45360678)
chr7 (370-443)||(6604709-6604782)
chr7 (370-439)||(47384989-47385058)
chr7 (370-443)||(34775745-34775818)
chr7 (314-371)||(45360727-45360784)
chr7 (314-371)||(38550121-38550178)
chr7 (370-442)||(77327-77399)
chr7 (370-442)||(35692132-35692204)
chr7 (314-363)||(6604839-6604888)
chr7 (314-371)||(34775639-34775696)
chr7 (314-371)||(48851147-48851204)
chr7 (319-371)||(22155291-22155343)
chr7 (319-371)||(22211206-22211258)
chr7 (314-371)||(77448-77505)
chr7 (314-371)||(20479111-20479168)
chr7 (314-357)||(37114529-37114572)
chr7 (314-371)||(47384883-47384940)
chr7 (317-371)||(35692029-35692083)
[»] chr8 (25 HSPs)
chr8 (314-441)||(41041311-41041438)
chr8 (314-443)||(40338399-40338528)
chr8 (370-443)||(41824644-41824717)
chr8 (378-443)||(7744112-7744177)
chr8 (382-443)||(9672095-9672156)
chr8 (370-443)||(26239415-26239488)
chr8 (370-442)||(15307562-15307634)
chr8 (370-442)||(15487931-15488003)
chr8 (370-442)||(27404926-27404998)
chr8 (370-442)||(29238464-29238536)
chr8 (314-371)||(26239309-26239366)
chr8 (314-357)||(42942874-42942917)
chr8 (314-371)||(13107404-13107461)
chr8 (314-371)||(15307683-15307740)
chr8 (314-371)||(15488052-15488109)
chr8 (314-371)||(27404820-27404877)
chr8 (314-371)||(38548263-38548320)
chr8 (314-371)||(41824539-41824595)
chr8 (314-366)||(22273338-22273390)
chr8 (314-371)||(13283427-13283484)
chr8 (314-364)||(7743998-7744048)
chr8 (370-420)||(11720132-11720182)
chr8 (370-427)||(13107510-13107567)
chr8 (370-427)||(13283321-13283378)
chr8 (370-427)||(38548157-38548214)
[»] chr5 (22 HSPs)
chr5 (314-443)||(34328192-34328321)
chr5 (314-442)||(18624044-18624169)
chr5 (360-443)||(28821663-28821746)
chr5 (370-442)||(17575206-17575278)
chr5 (370-442)||(17575926-17575998)
chr5 (370-442)||(17577237-17577309)
chr5 (370-442)||(42472265-42472337)
chr5 (370-443)||(2181040-2181113)
chr5 (314-371)||(2181162-2181219)
chr5 (370-439)||(21842275-21842344)
chr5 (314-371)||(21842393-21842450)
chr5 (314-371)||(42472159-42472216)
chr5 (314-371)||(17575326-17575383)
chr5 (314-371)||(17576046-17576103)
chr5 (314-371)||(17577357-17577414)
chr5 (314-371)||(29620778-29620835)
chr5 (314-371)||(30464541-30464598)
chr5 (314-355)||(40781636-40781677)
chr5 (318-371)||(41494437-41494490)
chr5 (318-357)||(18341571-18341610)
chr5 (314-364)||(32134835-32134885)
chr5 (370-427)||(7268782-7268839)
[»] chr4 (20 HSPs)
chr4 (314-443)||(11254657-11254786)
chr4 (314-443)||(41760326-41760455)
chr4 (314-441)||(42981866-42981993)
chr4 (371-443)||(48645721-48645793)
chr4 (314-371)||(54387335-54387392)
chr4 (378-442)||(51013197-51013261)
chr4 (370-429)||(35402453-35402512)
chr4 (397-443)||(54387219-54387265)
chr4 (370-443)||(11641358-11641431)
chr4 (314-367)||(48645607-48645660)
chr4 (314-371)||(833833-833890)
chr4 (370-442)||(833939-834014)
chr4 (314-371)||(5439069-5439126)
chr4 (314-371)||(51013318-51013375)
chr4 (378-438)||(2692076-2692136)
chr4 (315-371)||(35402348-35402404)
chr4 (319-371)||(11641480-11641532)
chr4 (318-364)||(2691966-2692012)
chr4 (370-442)||(5438945-5439020)
chr4 (323-371)||(10544447-10544495)
[»] chr2 (15 HSPs)
chr2 (314-443)||(6798794-6798923)
chr2 (314-435)||(17697503-17697624)
chr2 (314-443)||(42518156-42518283)
chr2 (314-443)||(2768202-2768331)
chr2 (314-443)||(34400909-34401038)
chr2 (370-442)||(39663847-39663919)
chr2 (370-443)||(44708604-44708677)
chr2 (370-443)||(19581872-19581945)
chr2 (370-442)||(6784070-6784142)
chr2 (370-442)||(24206313-24206385)
chr2 (314-371)||(39663741-39663798)
chr2 (311-371)||(37021578-37021638)
chr2 (314-357)||(40561324-40561367)
chr2 (314-371)||(6783964-6784021)
chr2 (314-371)||(19581766-19581823)
[»] chr1 (23 HSPs)
chr1 (314-443)||(37087498-37087627)
chr1 (314-443)||(15105715-15105841)
chr1 (370-443)||(50554885-50554958)
chr1 (370-443)||(52642609-52642682)
chr1 (378-443)||(6817591-6817656)
chr1 (314-371)||(50554779-50554836)
chr1 (370-442)||(33599925-33599997)
chr1 (314-371)||(6817477-6817534)
chr1 (370-439)||(26224327-26224396)
chr1 (370-435)||(27088563-27088628)
chr1 (314-371)||(31237418-31237475)
chr1 (314-369)||(51895166-51895221)
chr1 (314-371)||(1443590-1443647)
chr1 (314-371)||(9120679-9120736)
chr1 (314-371)||(33599819-33599876)
chr1 (314-371)||(52642503-52642560)
chr1 (314-357)||(3012454-3012497)
chr1 (314-357)||(26224221-26224264)
chr1 (314-371)||(4854997-4855054)
chr1 (314-355)||(34777168-34777209)
chr1 (314-371)||(47012079-47012136)
chr1 (314-355)||(27088693-27088734)
chr1 (370-427)||(34777274-34777331)
[»] chr3 (28 HSPs)
chr3 (317-443)||(44274947-44275073)
chr3 (314-443)||(46199008-46199137)
chr3 (314-443)||(21349983-21350112)
chr3 (320-443)||(43766410-43766533)
chr3 (319-443)||(30598940-30599063)
chr3 (372-443)||(27897899-27897970)
chr3 (370-443)||(51685689-51685762)
chr3 (378-443)||(42281811-42281876)
chr3 (370-442)||(53188482-53188554)
chr3 (397-443)||(2378278-2378324)
chr3 (314-371)||(2378374-2378431)
chr3 (314-371)||(27897791-27897848)
chr3 (314-371)||(51685811-51685868)
chr3 (370-442)||(35904531-35904603)
chr3 (314-367)||(42281937-42281990)
chr3 (315-371)||(48829711-48829767)
chr3 (404-443)||(48829831-48829870)
chr3 (314-371)||(7883925-7883982)
chr3 (314-371)||(35904425-35904482)
chr3 (314-371)||(41978784-41978841)
chr3 (314-371)||(53188376-53188433)
chr3 (317-369)||(23292173-23292225)
chr3 (318-369)||(24846009-24846060)
chr3 (314-357)||(1847132-1847175)
chr3 (325-371)||(35862131-35862177)
chr3 (370-443)||(13466474-13466547)
chr3 (370-407)||(24845922-24845959)
chr3 (370-427)||(41978678-41978735)
[»] chr6 (18 HSPs)
chr6 (314-443)||(7371710-7371839)
chr6 (314-443)||(20524696-20524825)
chr6 (377-443)||(6902228-6902294)
chr6 (377-443)||(11356464-11356530)
chr6 (370-443)||(7050837-7050910)
chr6 (370-443)||(9399387-9399460)
chr6 (370-443)||(10569478-10569551)
chr6 (314-371)||(7050959-7051016)
chr6 (370-439)||(32437864-32437933)
chr6 (314-371)||(33267624-33267681)
chr6 (314-371)||(6902350-6902407)
chr6 (314-367)||(9399513-9399566)
chr6 (316-371)||(10569599-10569654)
chr6 (314-371)||(11356586-11356643)
chr6 (370-435)||(18644558-18644623)
chr6 (370-416)||(33267730-33267776)
chr6 (314-355)||(32454888-32454929)
chr6 (317-371)||(32437761-32437815)
[»] scaffold0004 (2 HSPs)
scaffold0004 (377-443)||(107376-107442)
scaffold0004 (314-371)||(107263-107320)
[»] scaffold0345 (2 HSPs)
scaffold0345 (377-443)||(825-891)
scaffold0345 (314-371)||(947-1004)


Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 41353976 - 41354267
Alignment:
Q  18 tatacctcacttatatcttgagtcaagcctaatctggcagcttttctttgctctggtgtgaagcatgtctttctgattagtgaaaatcaccgaaaacaat 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41353976 tatacctcacttaaatcttgagtcaagcctaatctggcagcttttctttgctctggtgtgaagcatgtctttctgattagtgaaaatcaccgaaaacaat 41354075  T
Q  118 ccattgaatctaatttcgtgaggaattttactacttaagaggtctgatgacttgggtcttttgaagtaattttgtctgatatatgaaagttgttggctga 217  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  41354076 ccagtgaatctaatttcgtgaggaattttactacttaagaggtctgatgacttggatcttttgaagtaattttgtctgatatatgaaagttgttggctgg 41354175  T
Q  218 ttggtcagcaacatatgtttctgatagtcccagtcctacttattcatcatcaaaacctaaaatacttgtcaattagctgccgaaggtgtgca 309  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  41354176 ttggtcagcaacatatgtttctgatagtcccagttctacttatacatcatcaaaacttaaaatacttgtcaattagctgccgaaggtgtgca 41354267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 314 - 443
Target Start/End: Original strand, 38472851 - 38472980
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtact 413  Q
    ||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| | ||||    
T  38472851 gagagcttcaatgttggtgtcttagaatttgtgttgtaagaaaagccaacactgtcaacaatggttatgtgatgtgtgaatgatttgtttaaacaatact 38472950  T
Q  414 gattttgtcttttgattgtataggatgatg 443  Q
    ||||||||||||||||||||||||||||||    
T  38472951 gattttgtcttttgattgtataggatgatg 38472980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 314 - 443
Target Start/End: Original strand, 46438235 - 46438364
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtact 413  Q
    |||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46438235 gagagcttcaatgttggtgtcctataatttgtgttgtaaaaaaagccaacactgtcaacaatggttatgtgatgtgtgaatgatttgtttaaatagtact 46438334  T
Q  414 gattttgtcttttgattgtataggatgatg 443  Q
    || ||||||||||||||| || ||||||||    
T  46438335 gaatttgtcttttgattgcattggatgatg 46438364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 314 - 441
Target Start/End: Original strand, 24227147 - 24227274
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtact 413  Q
    ||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||| ||||||  ||||||||||||||||||||||||||||||| ||||    
T  24227147 gagagcttcaatgttagtgtcctagaatttgtgttgtaagaaaagccaacactgttaacaatgattatgtgatgtgtgaatgatttgtttaaatattact 24227246  T
Q  414 gattttgtcttttgattgtataggatga 441  Q
    ||||||||||||||||||||||||||||    
T  24227247 gattttgtcttttgattgtataggatga 24227274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 48851253 - 48851326
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  48851253 aacaatggttatgtgatgtgtgaatggtttgtttaaatagtactgattttgtcttttgattgtataagatgatg 48851326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 22155242 - 22155169
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||    
T  22155242 aacaatggttatgtgatgtgtgaatggtttgtttaaatagtactgaatttgtcctttgattgtataggatgatg 22155169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 22211157 - 22211084
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||    
T  22211157 aacaatggttatgtgatgtgtgaatggtttgtttaaatagtactgaatttgtcctttgattgtataggatgatg 22211084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 38550227 - 38550300
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||    
T  38550227 aacaatggttatgtgatgtgtgaatggtttgttaaaatagtactgattttgtcttttgattttataggatgatg 38550300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 45360678 - 45360605
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| ||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  45360678 aacaatggttatgtgatgtgcgaatggtctgtttaaatagtactgattttgtcttttgattgtataggatgatg 45360605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 6604782 - 6604709
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| ||||||||||||||||||  ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  6604782 aacaatggttatgtgatgtgtgaatagtttgtttaaatagtacttattttatcttttgattgtataggatgatg 6604709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 370 - 439
Target Start/End: Original strand, 47384989 - 47385058
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggat 439  Q
    |||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  47384989 aacaatggttatgtgatgtgtgaatggtttgtttaaatggtactgattttgtcttttgattgtacaggat 47385058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 34775745 - 34775818
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| ||||| ||||||| ||||| ||||||||||||||| ||||||||||||||| |||||||||||||||    
T  34775745 aacaatggttatatgatgtgcgaatggtttgtttaaatagtattgattttgtcttttggttgtataggatgatg 34775818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 45360784 - 45360727
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  45360784 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaagtcaacactgtcaa 45360727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 38550121 - 38550178
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  38550121 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaagccaacactgtcaa 38550178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 442
Target Start/End: Complemental strand, 77399 - 77327
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgat 442  Q
    |||||| ||||| | |||| |||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  77399 aacaatggttatttaatgtatgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgat 77327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 35692132 - 35692204
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgat 442  Q
    |||||| ||||||||||||||||||| ||| |||||||  || ||||||||||||||||||||||| ||||||    
T  35692132 aacaatggttatgtgatgtgtgaatgttttctttaaattatattgattttgtcttttgattgtataagatgat 35692204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 6604888 - 6604839
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaac 363  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  6604888 gagagcttcaatgttggtgtcctagaatttatgttgtaagaaaagtcaac 6604839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 34775639 - 34775696
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||||||| ||||||    
T  34775639 gagagcttcaatgttggtggcctagaatttgtgttgtaagaaaagtcaacagtgtcaa 34775696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 48851147 - 48851204
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    ||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||    
T  48851147 gagagcttcaatgttggtgtcatagaatttgtgttgtaagaaaagccaacactgtcaa 48851204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 22155343 - 22155291
Alignment:
Q  319 cttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  22155343 cttcaatgttggtgtcctagaatttgtgttgtaagaaaagccaacactgtcaa 22155291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 22211258 - 22211206
Alignment:
Q  319 cttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  22211258 cttcaatgttggtgtcctagaatttgtgttgtaagaaaagccaacactgtcaa 22211206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 77505 - 77448
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  77505 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaacagcaaacactgtcaa 77448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 20479168 - 20479111
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  20479168 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaagagcaaacactgtcaa 20479111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 37114529 - 37114572
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaa 357  Q
    |||||||||||||||||||||||| ||||| |||||||||||||    
T  37114529 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaa 37114572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 47384883 - 47384940
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    ||||| |||||||||||||||||| ||||| |||||||||||||  ||||| ||||||    
T  47384883 gagagattcaatgttggtgtcctagaatttgtgttgtaagaaaaaccaacattgtcaa 47384940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 35692029 - 35692083
Alignment:
Q  317 agcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    ||||||||||||||||||| | |||||  |||||||||||||  |||||||||||    
T  35692029 agcttcaatgttggtgtccaagaatttgcgttgtaagaaaagcaaacactgtcaa 35692083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 314 - 441
Target Start/End: Original strand, 41041311 - 41041438
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtact 413  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41041311 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaagccaacactgtcaacaatggttatgtgatgtgtgaatgatttgtttaaatagtact 41041410  T
Q  414 gattttgtcttttgattgtataggatga 441  Q
    ||||||||||||||||||||||||||||    
T  41041411 gattttgtcttttgattgtataggatga 41041438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 314 - 443
Target Start/End: Original strand, 40338399 - 40338528
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtact 413  Q
    ||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||    
T  40338399 gagagtttcaatgttggtgtcctagaatttgtgttgtaagaaaagtcaacactgtcaacaatgattatgtgatgcgtgaatgatttgtttaaatagtact 40338498  T
Q  414 gattttgtcttttgattgtataggatgatg 443  Q
    ||||||||||||||||||||||||||||||    
T  40338499 gattttgtcttttgattgtataggatgatg 40338528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 41824644 - 41824717
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  41824644 aacaatggttatgtgatgtgtgaatggtttgttaaaatagtactgattttgtcttttgattgtataggatgatg 41824717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 378 - 443
Target Start/End: Original strand, 7744112 - 7744177
Alignment:
Q  378 ttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  7744112 ttatgtgatgtgtgaatgatttgttaaaataatactgattttgtcttttgattgtataggatgatg 7744177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 382 - 443
Target Start/End: Original strand, 9672095 - 9672156
Alignment:
Q  382 gtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  9672095 gtgatgtgtgaatggtttgtttaaatagtactgattttgtcttttgattgtataagatgatg 9672156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 26239415 - 26239488
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| ||||||||||||||||||| |||||| || || ||||||||||||||||||||||||||||||||||    
T  26239415 aacaatggttatgtgatgtgtgaatggtttgttaaagtaatactgattttgtcttttgattgtataggatgatg 26239488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 370 - 442
Target Start/End: Complemental strand, 15307634 - 15307562
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgat 442  Q
    |||||| ||||| |||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  15307634 aacaatggttatttgatgtatgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgat 15307562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 370 - 442
Target Start/End: Complemental strand, 15488003 - 15487931
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgat 442  Q
    |||||| ||||| |||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  15488003 aacaatggttatttgatgtatgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgat 15487931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 27404926 - 27404998
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgat 442  Q
    |||||| ||||| |||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  27404926 aacaatggttatttgatgtatgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgat 27404998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 370 - 442
Target Start/End: Complemental strand, 29238536 - 29238464
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgat 442  Q
    |||||| ||||| |||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  29238536 aacaatggttatttgatgtatgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgat 29238464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 26239309 - 26239366
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||    
T  26239309 gagagcttcaatgttggtgtcctagaatttgtgtagtaagaaaagccaacactgtcaa 26239366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 42942917 - 42942874
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaa 357  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  42942917 gagagcttcaatgttggtgtcctataatttgtgttgtaagaaaa 42942874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 13107404 - 13107461
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  13107404 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaacagcaaacactgtcaa 13107461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 15307740 - 15307683
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  15307740 gagagcttcaatgttggtgtcctagaatttatgttgtaagaagagcaaacactgtcaa 15307683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 15488109 - 15488052
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  15488109 gagagcttcaatgttggtgtcctagaatttatgttgtaagaagagcaaacactgtcaa 15488052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 27404820 - 27404877
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  27404820 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaagagcaaacactgtcaa 27404877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 38548320 - 38548263
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  38548320 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaatagcaaacactgtcaa 38548263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 41824539 - 41824595
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    ||||| |||||||||||||||||| ||||| ||||||||||||||| |||||||||||    
T  41824539 gagagtttcaatgttggtgtcctaaaatttgtgttgtaagaaaagt-aacactgtcaa 41824595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 22273390 - 22273338
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacact 366  Q
    |||||||||||||||||||||||| ||||| |||||||||||||  |||||||    
T  22273390 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaaaccaacact 22273338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 13283484 - 13283427
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| |   |||||||||||    
T  13283484 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaacaacaaacactgtcaa 13283427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 7743998 - 7744048
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaaca 364  Q
    |||||||||| |||||||||| || ||||| |||||||||||||| |||||    
T  7743998 gagagcttcattgttggtgtcttagaatttgtgttgtaagaaaagccaaca 7744048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 420
Target Start/End: Original strand, 11720132 - 11720182
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttg 420  Q
    |||||| ||||||||||||||||||| ||||||||| |  |||||||||||    
T  11720132 aacaatggttatgtgatgtgtgaatggtttgtttaagttctactgattttg 11720182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 13107510 - 13107567
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttg 427  Q
    |||||| ||||| |||||| |||||| |||||||||||  ||||||||||| ||||||    
T  13107510 aacaatggttatttgatgtatgaatgttttgtttaaattatactgattttgccttttg 13107567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 13283378 - 13283321
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttg 427  Q
    |||||| ||||| |||||| |||||| |||||||||||  ||||||||||| ||||||    
T  13283378 aacaatggttatttgatgtatgaatgttttgtttaaattatactgattttgccttttg 13283321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 38548214 - 38548157
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttg 427  Q
    |||||| ||||| |||||| |||||| |||||||||||  ||||||||||| ||||||    
T  38548214 aacaatggttatttgatgtatgaatgttttgtttaaattatactgattttgccttttg 38548157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 314 - 443
Target Start/End: Complemental strand, 34328321 - 34328192
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtact 413  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  34328321 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaagccaacactgtcaacaatggttatgtgatgtgtgaatgatttgtttaaataatact 34328222  T
Q  414 gattttgtcttttgattgtataggatgatg 443  Q
    ||||||||||||||||||||||||||||||    
T  34328221 gattttgtcttttgattgtataggatgatg 34328192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 314 - 442
Target Start/End: Original strand, 18624044 - 18624169
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaa-gtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtac 412  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||  |     | |||||| ||||||||||||||||||| ||||||||||||||||    
T  18624044 gagagcttcaatgttggtgtcctataatttgtgttgtaagaaaaagtttat----ttaacaatggttatgtgatgtgtgaatggtttgtttaaatagtac 18624139  T
Q  413 tgattttgtcttttgattgtataggatgat 442  Q
    ||||||||||||||||||||||||||||||    
T  18624140 tgattttgtcttttgattgtataggatgat 18624169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 360 - 443
Target Start/End: Complemental strand, 28821746 - 28821663
Alignment:
Q  360 caacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  28821746 caacaatgtcaacaatggttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtctattgattgcataggatgatg 28821663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 370 - 442
Target Start/End: Complemental strand, 17575278 - 17575206
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgat 442  Q
    |||||| ||||| |||||| ||||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  17575278 aacaatggttatttgatgtatgaatgatttgtttaaattatactgattttgtcttttgattgtatatgatgat 17575206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 370 - 442
Target Start/End: Complemental strand, 17575998 - 17575926
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgat 442  Q
    |||||| ||||| |||||| ||||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  17575998 aacaatggttatttgatgtatgaatgatttgtttaaattatactgattttgtcttttgattgtatatgatgat 17575926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 370 - 442
Target Start/End: Complemental strand, 17577309 - 17577237
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgat 442  Q
    |||||| ||||| |||||| ||||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  17577309 aacaatggttatttgatgtatgaatgatttgtttaaattatactgattttgtcttttgattgtatatgatgat 17577237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 42472265 - 42472337
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgat 442  Q
    |||||| ||||| |||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  42472265 aacaatggttatttgatgtatgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgat 42472337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 2181113 - 2181040
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| ||||||||||||  ||||| ||| ||||||||||||||||||||||||||||||| ||| |||||||    
T  2181113 aacaatggttatgtgatgtccgaatggtttatttaaatagtactgattttgtcttttgattgcataagatgatg 2181040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 2181219 - 2181162
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  2181219 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaagccaacactgtcaa 2181162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 439
Target Start/End: Complemental strand, 21842344 - 21842275
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggat 439  Q
    |||||| ||||| |||||| |||||| |||||||||||  |||||||||| |||||||||||||||||||    
T  21842344 aacaatggttatttgatgtatgaatgttttgtttaaattatactgattttatcttttgattgtataggat 21842275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 21842450 - 21842393
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  21842450 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaatagctaacactgtcaa 21842393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 42472159 - 42472216
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  42472159 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaagagcaaacactgtcaa 42472216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 17575383 - 17575326
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    ||||||||| |||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  17575383 gagagcttccatgttggtgtcctagaatttgtgttgtaagaacagcaaacactgtcaa 17575326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 17576103 - 17576046
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    ||||||||| |||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  17576103 gagagcttccatgttggtgtcctagaatttgtgttgtaagaacagcaaacactgtcaa 17576046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 17577414 - 17577357
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    ||||||||| |||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  17577414 gagagcttccatgttggtgtcctagaatttgtgttgtaagaacagcaaacactgtcaa 17577357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 29620778 - 29620835
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    ||||| |||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  29620778 gagagtttcaatgttggtgtcctagaatttgtgttgtaagaagagcaaacactgtcaa 29620835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 30464541 - 30464598
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||| || |||| ||||| |||||||||| ||| ||||||||||||    
T  30464541 gagagcttcaatgttgctgacctagaatttgtgttgtaagagaagccaacactgtcaa 30464598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 355
Target Start/End: Complemental strand, 40781677 - 40781636
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaa 355  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  40781677 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaa 40781636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 41494437 - 41494490
Alignment:
Q  318 gcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    ||||||||||||||||| || ||||| |||||||||||||  ||||||||||||    
T  41494437 gcttcaatgttggtgtcatagaatttgtgttgtaagaaaaaccaacactgtcaa 41494490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 357
Target Start/End: Complemental strand, 18341610 - 18341571
Alignment:
Q  318 gcttcaatgttggtgtcctataatttttgttgtaagaaaa 357  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  18341610 gcttgaatgttggtgtcccataatttttgttgtaagaaaa 18341571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 32134835 - 32134885
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaaca 364  Q
    |||||||||||   |||||||||| ||||| ||||||||||||||||||||    
T  32134835 gagagcttcaacaatggtgtcctagaatttgtgttgtaagaaaagtcaaca 32134885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 7268839 - 7268782
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttg 427  Q
    |||||| ||||| |||||| |||||| |||||||||||  ||||||||||| ||||||    
T  7268839 aacaatggttatttgatgtatgaatgttttgtttaaattatactgattttgccttttg 7268782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 314 - 443
Target Start/End: Original strand, 11254657 - 11254786
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtact 413  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  11254657 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaagccaacactgtcaacaatgattatgtgatgtgtgaatgatttgtttaaatagtact 11254756  T
Q  414 gattttgtcttttgattgtataggatgatg 443  Q
    ||||||||||||||||||||||||||||||    
T  11254757 gattttgtcttttgattgtataggatgatg 11254786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 314 - 443
Target Start/End: Original strand, 41760326 - 41760455
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtact 413  Q
    |||||||||||||||||||||||| ||||| |||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41760326 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaatccaacactgtcaacaatggttatgtgatgtgtgaatgatttgtttaaatagtact 41760425  T
Q  414 gattttgtcttttgattgtataggatgatg 443  Q
    ||||||||||||||||||||||||||||||    
T  41760426 gattttgtcttttgattgtataggatgatg 41760455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 314 - 441
Target Start/End: Complemental strand, 42981993 - 42981866
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtact 413  Q
    |||||||||||||||||||||||| ||||| | ||||||| |||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  42981993 gagagcttcaatgttggtgtcctagaatttgttttgtaaggaaagccaacactgtcaacaatggttatgtgatgtgtgaatgatttatttaaatagtact 42981894  T
Q  414 gattttgtcttttgattgtataggatga 441  Q
    ||||||| |||||||||||| |||||||    
T  42981893 gattttgccttttgattgtacaggatga 42981866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 371 - 443
Target Start/End: Original strand, 48645721 - 48645793
Alignment:
Q  371 acaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    ||||| |||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  48645721 acaatggttatgcgatgtgtgaatgatttgttaaaatagtactgattttgccttttgattgtataggatgatg 48645793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 54387392 - 54387335
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  54387392 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaagccaacactgtcaa 54387335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 442
Target Start/End: Complemental strand, 51013261 - 51013197
Alignment:
Q  378 ttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgat 442  Q
    |||| |||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  51013261 ttatttgatgtatgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgat 51013197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 370 - 429
Target Start/End: Original strand, 35402453 - 35402512
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgat 429  Q
    |||||| || ||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  35402453 aacaatggtcatgtgatgtgtcaatggtttgtttaaatagtactgattttgtcttttgat 35402512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 443
Target Start/End: Complemental strand, 54387265 - 54387219
Alignment:
Q  397 tttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  54387265 tttgttaaaatagtactgattttgtcttttgattgtataggatgatg 54387219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 11641431 - 11641358
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| ||||||||||||||||||| ||| ||||||| ||||||||||||  ||||  |||||||||||||||    
T  11641431 aacaatggttatgtgatgtgtgaatggtttttttaaattgtactgattttgaattttctttgtataggatgatg 11641358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 367
Target Start/End: Original strand, 48645607 - 48645660
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactg 367  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||    
T  48645607 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaagccaacactg 48645660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 833833 - 833890
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  833833 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaagagcaaacactgtcaa 833890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 833939 - 834014
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttt---tgattgtataggatgat 442  Q
    |||||| ||||| |||||| |||||| |||||||||||  ||||||||||||||||   |||||||||||||||||    
T  833939 aacaatggttatttgatgtatgaatgttttgtttaaattatactgattttgtcttttgatgattgtataggatgat 834014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 5439126 - 5439069
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  5439126 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaagagcaaacactgtcaa 5439069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 51013375 - 51013318
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  51013375 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaacagcaaacactgtcaa 51013318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 2692076 - 2692136
Alignment:
Q  378 ttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtatagga 438  Q
    |||||||||||||||||| ||||||||||| ||||||||||||  ||||  ||||||||||    
T  2692076 ttatgtgatgtgtgaatggtttgtttaaattgtactgattttgaattttctttgtatagga 2692136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 35402348 - 35402404
Alignment:
Q  315 agagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||| |||||||||||| | ||||| |||||||||||||||||||||| ||||    
T  35402348 agagcttcgatgttggtgtccaagaatttgtgttgtaagaaaagtcaacactatcaa 35402404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 11641532 - 11641480
Alignment:
Q  319 cttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||| || ||||| |||||||||||||| ||||||| ||||    
T  11641532 cttcaatgttggtgtcatagaatttgtgttgtaagaaaagccaacactatcaa 11641480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 364
Target Start/End: Original strand, 2691966 - 2692012
Alignment:
Q  318 gcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaaca 364  Q
    ||||||||||||||||| || ||||| |||||||||||||| |||||    
T  2691966 gcttcaatgttggtgtcatagaatttgtgttgtaagaaaagccaaca 2692012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 442
Target Start/End: Complemental strand, 5439020 - 5438945
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttt---tgattgtataggatgat 442  Q
    |||||| ||||| |||||| | |||  |||||||||||  ||||||||||||||||   |||||||||||||||||    
T  5439020 aacaatggttatttgatgtataaatattttgtttaaattatactgattttgtcttttgatgattgtataggatgat 5438945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 10544495 - 10544447
Alignment:
Q  323 aatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    ||||||||||||| ||||||| ||| |||||||||||||| ||| ||||    
T  10544495 aatgttggtgtcccataatttgtgtggtaagaaaagtcaatactctcaa 10544447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 7e-53; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 314 - 443
Target Start/End: Complemental strand, 6798923 - 6798794
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtact 413  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||  |||||||||||||||||||||||||||||||||||||    
T  6798923 gagagcttcaatgttggtgtcctaaaatttgtgttgtaagaaaagacaacactatcaacaacggttatgtgatgtgtgaatgatttgtttaaatagtact 6798824  T
Q  414 gattttgtcttttgattgtataggatgatg 443  Q
    ||||||||||||||||||||||||||||||    
T  6798823 gattttgtcttttgattgtataggatgatg 6798794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 314 - 435
Target Start/End: Complemental strand, 17697624 - 17697503
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtact 413  Q
    |||||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17697624 gagagcttcaatgttggtgtcctagaatttgtgttgtcagaaaagccaacactgtcaacaatggttatgtgatgtgtgaatgatttgtttaaatagtact 17697525  T
Q  414 gattttgtcttttgattgtata 435  Q
    ||||||||||||||||||||||    
T  17697524 gattttgtcttttgattgtata 17697503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 314 - 443
Target Start/End: Original strand, 42518156 - 42518283
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtact 413  Q
    |||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  42518156 gagagctttaatgttggtgtcctaaaatttttgttgtaagaaaagccaacactgtcaacaatggttatgtgatgcgtgaatgatttgtttaaatagtact 42518255  T
Q  414 gattttgtcttttgattgtataggatgatg 443  Q
    ||  ||||||||||||||||||||||||||    
T  42518256 ga--ttgtcttttgattgtataggatgatg 42518283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 314 - 443
Target Start/End: Complemental strand, 2768331 - 2768202
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtact 413  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  2768331 gagagcttcaatgttggtgtcctagaatttgtgttgtaaaaaaagccaacactatcaacaatggttatgtgatgtgtgaatgatttgtttaaatagtact 2768232  T
Q  414 gattttgtcttttgattgtataggatgatg 443  Q
    | ||||||||||||||| ||||||||||||    
T  2768231 ggttttgtcttttgattatataggatgatg 2768202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 314 - 443
Target Start/End: Original strand, 34400909 - 34401038
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtact 413  Q
    ||||||||||||||||||||| || ||||  |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  34400909 gagagcttcaatgttggtgtcttagaattcgtgttttaagaaaagccaacactgtcaacaatagttatgtgatgtgtgaataatttgtttaaatagtaca 34401008  T
Q  414 gattttgtcttttgattgtataggatgatg 443  Q
     |||||||||||||||||||||||||||||    
T  34401009 tattttgtcttttgattgtataggatgatg 34401038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 39663847 - 39663919
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgat 442  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39663847 aacaatggttatgtgatgtgcgaatggtttgtttaaatagtactgattttgtcttttgattgtataggatgat 39663919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 44708604 - 44708677
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  44708604 aacaatggttatgtgatgtgtgaatggtttgtttaaatagtacttattttgtcttttgattgtatatgatgatg 44708677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 19581872 - 19581945
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| |||||| |||||||||||| |||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  19581872 aacaatggttatgcgatgtgtgaatggtttgttaaaatagtactgattttgtcttttaattgtgtaggatgatg 19581945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 6784070 - 6784142
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgat 442  Q
    |||||| ||||| |||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  6784070 aacaatggttatttgatgtatgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgat 6784142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 24206313 - 24206385
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgat 442  Q
    |||||| ||||| |||||| |||||| ||| |||||||  |||||||||||||||||||||||||||||||||    
T  24206313 aacaatggttatttgatgtatgaatgttttatttaaattatactgattttgtcttttgattgtataggatgat 24206385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 39663741 - 39663798
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||||    
T  39663741 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaagccaacaccgtcaa 39663798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 371
Target Start/End: Complemental strand, 37021638 - 37021578
Alignment:
Q  311 tgggagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  37021638 tgggagagcttcaatgttggtgtcctagaatttgtgttgtaagaagagcaaacactgtcaa 37021578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 40561367 - 40561324
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaa 357  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  40561367 gagagcttcaatgttggtgtcctataatttgtgttgtaagaaaa 40561324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 6783964 - 6784021
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  6783964 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaagagcaaacactgtcaa 6784021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 19581766 - 19581823
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    ||||||||||||||||| |||||| ||||| | |||||||||||| ||||||||||||    
T  19581766 gagagcttcaatgttggcgtcctagaatttgtattgtaagaaaagccaacactgtcaa 19581823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 314 - 443
Target Start/End: Complemental strand, 37087627 - 37087498
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtact 413  Q
    |||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  37087627 gagagcttcaatgttggtgtcctagaatttgtattgtaagaaaagccaacactgtcaacaatggttatgtgatgtgtgaatgctttgtttaaatagtact 37087528  T
Q  414 gattttgtcttttgattgtataggatgatg 443  Q
    ||||||||||||||||||||||||||||||    
T  37087527 gattttgtcttttgattgtataggatgatg 37087498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 314 - 443
Target Start/End: Complemental strand, 15105841 - 15105715
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaag-tcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtac 412  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |  |     | |||||| ||||||||||||||||||| ||||||||||||||||    
T  15105841 gagagcttcaatgttggtgtcctataatttgtgttgtaagaaaaggtttat----ttaacaatggttatgtgatgtgtgaatggtttgtttaaatagtac 15105746  T
Q  413 tgattttgtcttttgattgtataggatgatg 443  Q
    ||||||| |||||||||||||||||||||||    
T  15105745 tgattttttcttttgattgtataggatgatg 15105715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 50554885 - 50554958
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50554885 aacaatagttatgtgatgtgcgaatggtttgtttaaatagtactgattttgtcttttgattgtataggatgatg 50554958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 52642609 - 52642682
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  52642609 aacaatggttatgtgatgtgtcaatggtttgttaaaatagtactgattttgtcttttgattgtataggatgatg 52642682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 378 - 443
Target Start/End: Original strand, 6817591 - 6817656
Alignment:
Q  378 ttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  6817591 ttatgtgatgtgtgaatggtttgtttaaatagtactaattttgtcttttgattgtatatgatgatg 6817656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 50554779 - 50554836
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  50554779 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaagtcaacactgtcaa 50554836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 33599925 - 33599997
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgat 442  Q
    |||||| ||||| |||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  33599925 aacaatggttatttgatgtatgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgat 33599997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 6817477 - 6817534
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  6817477 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaagccaacactgtcaa 6817534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 370 - 439
Target Start/End: Original strand, 26224327 - 26224396
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggat 439  Q
    |||||| ||||| |||||| |||||| |||||||||||  ||||||||||||||||||||||||||||||    
T  26224327 aacaatggttatttgatgtatgaatgttttgtttaaattatactgattttgtcttttgattgtataggat 26224396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 370 - 435
Target Start/End: Complemental strand, 27088628 - 27088563
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtata 435  Q
    |||||||||||| |||||| |||||| |||||||||||  ||||||||||||||||||||||||||    
T  27088628 aacaatagttatttgatgtatgaatgttttgtttaaattatactgattttgtcttttgattgtata 27088563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 31237418 - 31237475
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||||||| ||||||||    
T  31237418 gagagcttcaatgttgctgtcctagaatttgtgttgtaagaaaagtcaagactgtcaa 31237475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 369
Target Start/End: Original strand, 51895166 - 51895221
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtc 369  Q
    |||||||||||||||||||||||| ||||| |||||||||||||  ||||||||||    
T  51895166 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaaaccaacactgtc 51895221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 1443647 - 1443590
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  1443647 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaagagcaaacactgtcaa 1443590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 9120679 - 9120736
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  9120679 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaagagcaaacactgtcaa 9120736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 33599819 - 33599876
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||  |||||| ||||    
T  33599819 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaagcaaacactatcaa 33599876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 52642503 - 52642560
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||| |||||| |||||    
T  52642503 gagagcttcaatgttggtgtcctagaatttatgttgtaaaaaaagccaacaccgtcaa 52642560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 3012454 - 3012497
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaa 357  Q
    |||||||||||||||||||||||| ||||| |||||||||||||    
T  3012454 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaa 3012497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 26224221 - 26224264
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaa 357  Q
    |||||||||||||||||||||||| ||||| |||||||||||||    
T  26224221 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaa 26224264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 4854997 - 4855054
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| |   |||||||||||    
T  4854997 gagagcttcaatgttggtgtcctaaaatttgtgttgtaagaataccaaacactgtcaa 4855054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 355
Target Start/End: Original strand, 34777168 - 34777209
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaa 355  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  34777168 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaa 34777209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 47012079 - 47012136
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| || || ||||||||||| ||  |||||||||||    
T  47012079 gagagcttcaatgttggtgtcctagaaattgtgttgtaagaagagcaaacactgtcaa 47012136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 355
Target Start/End: Complemental strand, 27088734 - 27088693
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaa 355  Q
    |||||||||||||||||||||||| ||||| |||||| ||||    
T  27088734 gagagcttcaatgttggtgtcctagaatttgtgttgtgagaa 27088693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 34777274 - 34777331
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttg 427  Q
    |||||| ||||| |||||| |||||| |||||||||||  ||||||||||| ||||||    
T  34777274 aacaatggttatttgatgtatgaatgttttgtttaaattatactgattttgccttttg 34777331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 317 - 443
Target Start/End: Original strand, 44274947 - 44275073
Alignment:
Q  317 agcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgat 416  Q
    ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||    
T  44274947 agcttcaatgttggtgtcctagaatttgtgttgtaagaaaagccaacactgtcaacaatagttatgtgatgtgtgaataatttgtttaaatagtacatat 44275046  T
Q  417 tttgtcttttgattgtataggatgatg 443  Q
    |||||||||||||||||||||||||||    
T  44275047 tttgtcttttgattgtataggatgatg 44275073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 314 - 443
Target Start/End: Complemental strand, 46199137 - 46199008
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtact 413  Q
    ||||||||||||||||||| |||||||||| | |||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  46199137 gagagcttcaatgttggtgccctataatttgtattgtaagaaaagccaacactgtcaacaatggctatgtgatgtgtgaatgatttgtttaaatagtact 46199038  T
Q  414 gattttgtcttttgattgtataggatgatg 443  Q
    ||||||||||||| ||||||||||||||||    
T  46199037 gattttgtcttttaattgtataggatgatg 46199008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 314 - 443
Target Start/End: Complemental strand, 21350112 - 21349983
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtact 413  Q
    |||||||||||||||||||||||| ||||| |||  ||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  21350112 gagagcttcaatgttggtgtcctaaaatttgtgtactaagaaaaaccaacactgtcaacaatggttatgtgatgtgtgaatgatttgtttaaatagtaca 21350013  T
Q  414 gattttgtcttttgattgtataggatgatg 443  Q
    ||||||||||||||||||||||||||||||    
T  21350012 gattttgtcttttgattgtataggatgatg 21349983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 320 - 443
Target Start/End: Complemental strand, 43766533 - 43766410
Alignment:
Q  320 ttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgatttt 419  Q
    |||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||    
T  43766533 ttcaatgttggtgtcctaaaatttgtgttgtaagaaaaggcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaagtagtacaaatttt 43766434  T
Q  420 gtcttttgattgtataggatgatg 443  Q
    ||||||| ||||||||||||||||    
T  43766433 gtctttttattgtataggatgatg 43766410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 319 - 443
Target Start/End: Original strand, 30598940 - 30599063
Alignment:
Q  319 cttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattt 418  Q
    |||||||||||||| |||| ||||| ||||||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||    
T  30598940 cttcaatgttggtgacctagaatttgtgttgtaagaaaagctaacactgtcaacaatggttatgt-atgtgtgaatgatttgtttaaatagtacttattt 30599038  T
Q  419 tgtcttttgattgtataggatgatg 443  Q
    ||||||||||||||||| |||||||    
T  30599039 tgtcttttgattgtataagatgatg 30599063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 372 - 443
Target Start/End: Original strand, 27897899 - 27897970
Alignment:
Q  372 caatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  27897899 caatggttatgtgatgtgcgaatggtttgtgtaaatagtactgattttgtcttttgattgtataggatgatg 27897970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 51685762 - 51685689
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| ||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  51685762 aacaatggttatgtgacgtgtgaatggtttgttaaaatagtaccgattttgtcttttgattgtataggatgatg 51685689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 378 - 443
Target Start/End: Complemental strand, 42281876 - 42281811
Alignment:
Q  378 ttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  42281876 ttatttgatgtgcgaatggtttgttaaaatagtactgattttgtcttttgattgtataggatgatg 42281811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 53188482 - 53188554
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgat 442  Q
    |||||| ||||| |||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  53188482 aacaatggttatttgatgtatgaatgttttgtttaaattatactgattttgtcttttgattgtataggatgat 53188554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 397 - 443
Target Start/End: Complemental strand, 2378324 - 2378278
Alignment:
Q  397 tttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2378324 tttgtttaaatagtactgattttgtcttttgattgtataggatgatg 2378278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 2378431 - 2378374
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  2378431 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaagccaacactgtcaa 2378374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 27897791 - 27897848
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  27897791 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaagccaacactgtcaa 27897848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 51685868 - 51685811
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  51685868 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaagccaacactgtcaa 51685811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 35904531 - 35904603
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgat 442  Q
    |||||| ||||| |||||| |||||| |||||||||||  ||||||||||||||||| |||||||||||||||    
T  35904531 aacaatggttatttgatgtatgaatgttttgtttaaattatactgattttgtctttttattgtataggatgat 35904603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 42281990 - 42281937
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactg 367  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||    
T  42281990 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaagccaacactg 42281937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 48829711 - 48829767
Alignment:
Q  315 agagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||    
T  48829711 agagcttcaatgttggtgtcttagaatttgtgttgtaagaaaagccaacactgtcaa 48829767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 443
Target Start/End: Original strand, 48829831 - 48829870
Alignment:
Q  404 aaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48829831 aaatagtactgattttgtcttttgattgtataggatgatg 48829870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 7883925 - 7883982
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||||  |||||||||||    
T  7883925 gagagcttcaatgttggtgtcctagaatttgtgttgcaagaaaagcaaacactgtcaa 7883982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 35904425 - 35904482
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  35904425 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaacagcaaacactgtcaa 35904482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 41978841 - 41978784
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  41978841 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaatagcaaacactgtcaa 41978784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 53188376 - 53188433
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||    
T  53188376 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaacagcaaacactgtcaa 53188433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 23292173 - 23292225
Alignment:
Q  317 agcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtc 369  Q
    ||||||||||||||||||||| ||||| |||||||||||||  ||||||||||    
T  23292173 agcttcaatgttggtgtcctagaatttgtgttgtaagaaaaaccaacactgtc 23292225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 369
Target Start/End: Complemental strand, 24846060 - 24846009
Alignment:
Q  318 gcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtc 369  Q
    ||||||||||||||||| || ||||| |||||||||||||| ||||||||||    
T  24846060 gcttcaatgttggtgtcatagaatttgtgttgtaagaaaagccaacactgtc 24846009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 1847175 - 1847132
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaa 357  Q
    |||||||| ||||||||||||||||||||| |||||| ||||||    
T  1847175 gagagcttgaatgttggtgtcctataatttgtgttgttagaaaa 1847132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 371
Target Start/End: Original strand, 35862131 - 35862177
Alignment:
Q  325 tgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    ||||||||||| ||||||| |||| ||||||||||||| ||||||||    
T  35862131 tgttggtgtcccataatttgtgttttaagaaaagtcaatactgtcaa 35862177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 13466547 - 13466474
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| ||||||||||||| ||||| |||||| || |  |||||||||||  ||||  |||||||||||||||    
T  13466547 aacaatggttatgtgatgtgggaatggtttgttaaacttttactgattttgaattttctttgtataggatgatg 13466474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 407
Target Start/End: Complemental strand, 24845959 - 24845922
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaat 407  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  24845959 aacaatggttatgtgatgtgtgaatggtttgtttaaat 24845922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 41978735 - 41978678
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttg 427  Q
    |||||| ||||| |||||| |||||| |||||||||||  ||||||||||| ||||||    
T  41978735 aacaatggttatttgatgtatgaatgttttgtttaaattatactgattttgccttttg 41978678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 314 - 443
Target Start/End: Original strand, 7371710 - 7371839
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtact 413  Q
    ||||||||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  7371710 gagagcttcaatgctggtgtcctagaatttgtgttgtaagaaaagccaacactgtcaacaatagttatgtgacatgtgaatgatttgtttaaatagtact 7371809  T
Q  414 gattttgtcttttgattgtataggatgatg 443  Q
    ||||||||||||||||||||||| ||||||    
T  7371810 gattttgtcttttgattgtatagaatgatg 7371839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 314 - 443
Target Start/End: Complemental strand, 20524825 - 20524696
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaacaatagttatgtgatgtgtgaatgatttgtttaaatagtact 413  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  20524825 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaaggcaacactgtcaacaatggttatgtgatgtgtgaatgatttgtttaaatagtaca 20524726  T
Q  414 gattttgtcttttgattgtataggatgatg 443  Q
     |||||||||| || |||||||||||||||    
T  20524725 aattttgtcttctgcttgtataggatgatg 20524696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 377 - 443
Target Start/End: Complemental strand, 6902294 - 6902228
Alignment:
Q  377 gttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    ||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||    
T  6902294 gttatgtgatgtgtgaatggtttgttaaaatagaactgattttgtcttttgattgtataggatgatg 6902228  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 377 - 443
Target Start/End: Complemental strand, 11356530 - 11356464
Alignment:
Q  377 gttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  11356530 gttatgtgatgtgtgaatggtttgtttaaatagtacttattttgtcttttgattgtatatgatgatg 11356464  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 7050910 - 7050837
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| |||||| |||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||    
T  7050910 aacaatggttatgcgatgtgtgaatggtttgttaaaatagtattgattttgtcttttgattgtataggatgatg 7050837  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 9399460 - 9399387
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| ||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||    
T  9399460 aacaatggttatgtaatgtgtgaatggtttgtttaaatagtactaattttgtcttttgattgtataggacgatg 9399387  T

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Target: chr6; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 10569551 - 10569478
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    |||||| |||||| |||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||    
T  10569551 aacaatggttatgcgatgtgtgaatggtttgttaaaatagtactgattttgtcttttgattgtacaggatgatg 10569478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 7051016 - 7050959
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  7051016 gagagcttcaatgttggtgtcctataatttgtgttgtaagaaaagccaacactgtcaa 7050959  T

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Target: chr6; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 370 - 439
Target Start/End: Original strand, 32437864 - 32437933
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggat 439  Q
    |||||| ||||| |||||| |||||| |||||||||||  ||||||||||||||||||||||||||||||    
T  32437864 aacaatggttatttgatgtatgaatgttttgtttaaattatactgattttgtcttttgattgtataggat 32437933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 33267624 - 33267681
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||    
T  33267624 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaagtcaacattgtcaa 33267681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 6902407 - 6902350
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||    
T  6902407 gagagcttcaatgttggtgtcctagaatttgtgtagtaagaaaagccaacactgtcaa 6902350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 9399566 - 9399513
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactg 367  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||    
T  9399566 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaaaagccaacactg 9399513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 371
Target Start/End: Complemental strand, 10569654 - 10569599
Alignment:
Q  316 gagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||    
T  10569654 gagcttcaatgttggtgtcctagaatttgtgttgtaagaaaagccaacactatcaa 10569599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 11356643 - 11356586
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    ||||||||||||||||||||| || ||||| |||||||||||||| ||||||| ||||    
T  11356643 gagagcttcaatgttggtgtcatagaatttgtgttgtaagaaaagccaacactatcaa 11356586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 435
Target Start/End: Complemental strand, 18644623 - 18644558
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtata 435  Q
    |||||| ||||| |||| | |||||| |||||||||||  ||||||||||||||||||||||||||    
T  18644623 aacaattgttatttgatatatgaatgttttgtttaaattatactgattttgtcttttgattgtata 18644558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 416
Target Start/End: Original strand, 33267730 - 33267776
Alignment:
Q  370 aacaatagttatgtgatgtgtgaatgatttgtttaaatagtactgat 416  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  33267730 aacaatggttatgtgatgtgtgaatggtttgtttaaatagtattgat 33267776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 355
Target Start/End: Original strand, 32454888 - 32454929
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaa 355  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  32454888 gagagcttcaatgttggtgtcctagaatttgtgttgtaagaa 32454929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 32437761 - 32437815
Alignment:
Q  317 agcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    ||||||||||||| ||||||| ||||| ||||||||||| ||  |||||||||||    
T  32437761 agcttcaatgttgttgtcctagaatttgtgttgtaagaacagcaaacactgtcaa 32437815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 377 - 443
Target Start/End: Original strand, 107376 - 107442
Alignment:
Q  377 gttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  107376 gttatgtgatgtgtgaatggtttgtttaaatagtactgattttgtcttttgattgtataggatgatg 107442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 107263 - 107320
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| |||||| ||||||    
T  107263 gagagcttcaatgttggtgtcctaaaatttgtgttgtaagaaaattcaacattgtcaa 107320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 377 - 443
Target Start/End: Complemental strand, 891 - 825
Alignment:
Q  377 gttatgtgatgtgtgaatgatttgtttaaatagtactgattttgtcttttgattgtataggatgatg 443  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  891 gttatgtgatgtgtgaatggtttgtttaaatagtacttattttgtcttttgattgtatatgatgatg 825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 1004 - 947
Alignment:
Q  314 gagagcttcaatgttggtgtcctataatttttgttgtaagaaaagtcaacactgtcaa 371  Q
    ||||||||||||||||||||| || ||||| |||||||||||||| ||||||| ||||    
T  1004 gagagcttcaatgttggtgtcatagaatttgtgttgtaagaaaagccaacactatcaa 947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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