View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18606_low_7 (Length: 414)
Name: NF18606_low_7
Description: NF18606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18606_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 10 - 396
Target Start/End: Original strand, 34216711 - 34217097
Alignment:
| Q |
10 |
attattctttagaataggttcatggaatggaagaattttatcaggaattccttctgagacactttacaaagcctataacttttcatttgtgattactgag |
109 |
Q |
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| T |
34216711 |
attattctttagaataggttcatggaatggaagaattttatcaggaattccttctgagacactttacaaagcctataacttttcatttgtgattactgag |
34216810 |
T |
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| Q |
110 |
aaggaaatttcttatggatatgaacttttgaacaagtctgttgtttcaagatacttggtatcttcaactggtcaaatagcgcgatacatgttgtcgaatc |
209 |
Q |
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| T |
34216811 |
aaggaaatttcttatggatatgaacttttgaacaagtctgttgtttcaagatacttggtatcttcaactggtcaaatagcgcgatacatgttgtcggatc |
34216910 |
T |
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| Q |
210 |
agacaaatagttggcaacttttctttgtcggacctgcagacagttgtgataattatgctatctgtggtgcaaattctaactgtgatattgataactcacc |
309 |
Q |
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| T |
34216911 |
agacaaatagttggcaacttttctttgtcggacctgcagacagttgtgataattatgctatctgtggtgcaaattctaactgtgatattgataagtcacc |
34217010 |
T |
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| Q |
310 |
agtatgtgaatgtcttgaaggcttcattccaaaatctcaagcaaactggagttcacaaaattggtcggatggttgtgttaggaaagt |
396 |
Q |
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| T |
34217011 |
agtatgtgaatgtcttgaaggtttcgttccaaagtctcaagcaaactggagtttacaaaattggtcggatggttgtgttaggaaagt |
34217097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 10 - 397
Target Start/End: Complemental strand, 34194865 - 34194478
Alignment:
| Q |
10 |
attattctttagaataggttcatggaatggaagaattttatcaggaattccttctgagacactttacaaagcctataacttttcatttgtgattactgag |
109 |
Q |
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| T |
34194865 |
attattatttagagtaggttcatggaatggaaattttttatccggaatctcttctacgacgctttacaaatccttcaatatttcatttgtgattactgaa |
34194766 |
T |
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| Q |
110 |
aaggaaatttcttatggatatgaacttttgaacaagtctgttgtttcaagatacttggtatcttcaactggtcaaatagcgcgatacatgttgtcgaatc |
209 |
Q |
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| T |
34194765 |
aaggaagtttcttatggatatgaacttttggacaagtccattgtttcaaggtacatgctaactccaatcggtcaagtatcgcgttacatgttgtccgatc |
34194666 |
T |
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| Q |
210 |
agacaaatagttggcaacttttctttgtcggacctgcaga-cagttgtgataattatgctatctgtggtgcaaattctaactgtgatattgataactcac |
308 |
Q |
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| T |
34194665 |
agacaaagagttggcaacttgtctttgttggtccttcggatcag-tgcgataattatgctctttgtggtgcaaattctaattgtgatattgataattctc |
34194567 |
T |
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| Q |
309 |
cagtatgtgaatgtcttgaaggcttcattccaaaatctcaagcaaactggagttcacaaaattggtcggatggttgtgttaggaaagtt |
397 |
Q |
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| T |
34194566 |
caatatgtgaatgttttaaaggtttcattccaaaatctcaggaaaagtggagttcccaaaattggactgatggttgtgttaggagagtt |
34194478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 20 - 397
Target Start/End: Original strand, 34205296 - 34205673
Alignment:
| Q |
20 |
agaataggttcatggaatggaagaattttatcaggaattccttctgagacactttacaaagcctataacttttcatttgtgattactgagaaggaaattt |
119 |
Q |
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|||||||||||||||||||||| || ||| | |||||||||||| ||| |||||| | || ||| || | ||| | ||||||||| |||| ||| |
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| T |
34205296 |
agaataggttcatggaatggaaatatgttaactggaattccttctacgacgctttactcaaactttaatttcacttttttttttactgagacggaagttt |
34205395 |
T |
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| Q |
120 |
cttatggatatgaacttttgaacaagtctgttgtttcaagatacttggtatcttcaactggtcaaatagcgcgatacatgttgtcgaatcagacaaatag |
219 |
Q |
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| T |
34205396 |
cttatggatatgaacttttggaatcatcaatagtttcaaggtacatgctcacatcgacagggcaaatgacgcgttacatattttcggaccagaaaaagag |
34205495 |
T |
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| Q |
220 |
ttggcaacttttctttgtcggacctgcagacagttgtgataattatgctatctgtggtgcaaattctaactgtgatattgataactcaccagtatgtgaa |
319 |
Q |
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|| ||||||||||| | || |||||||||||||||||||| ||| ||||||||||||||||||||| |||||| | ||||| |||||| ||||||| |
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| T |
34205496 |
ttttgaacttttctttcttggccctgcagacagttgtgataactatcttatctgtggtgcaaattctaattgtgatcctaataacacaccagcatgtgaa |
34205595 |
T |
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| Q |
320 |
tgtcttgaaggcttcattccaaaatctcaagcaaactggagttcacaaaattggtcggatggttgtgttaggaaagtt |
397 |
Q |
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| T |
34205596 |
tgtcttaaaggtttcattccgaagtctaaagaaaagtggaattcacaaatttggtcggatggttgtgttaggagagtt |
34205673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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