View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18606_low_9 (Length: 374)
Name: NF18606_low_9
Description: NF18606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18606_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 7 - 357
Target Start/End: Complemental strand, 40185451 - 40185101
Alignment:
| Q |
7 |
aatataatccaaagtatatgtgctaatgtaatttatcatatgcattttggtgatgcaaataagtaacgaccaaccactttttgatggagcaagaagaaaa |
106 |
Q |
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| T |
40185451 |
aatataatcaaaagtatatgtgctaatgtaatttatcataagcattttggtgatgcaaataagtaacgaccaaccactttttgatggagcaagaagaaaa |
40185352 |
T |
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| Q |
107 |
tatgaaataaagtatacactttggatcaagtatagatgttcccttaataaagataggtgaattttaatttattctatcattcttctatgtagtgggaatg |
206 |
Q |
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| T |
40185351 |
tatgaaataaagtatacactttggatcaagtatagatgttcccttaataaagataggtgaattttaatttattctatcattcttctatgtagtgggaatg |
40185252 |
T |
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| Q |
207 |
tgggacagttaaccaaaattcaccctcagcaaccttactttatgtgaagggatttttggtacagtccttgctatacgtttagcaaattggttaattatta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40185251 |
tgggacagttaaccaaaattcaccctcagcaaccttactttatgtgaagggatttttggtacagtccttgctatacgtttagcaaattggttaattatta |
40185152 |
T |
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| Q |
307 |
atcccactacaatgtagtactggctatgtttgcaacccggtttccctacat |
357 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40185151 |
atcccactacaatgcagtactggctatgtttgcaacccggtttccctacat |
40185101 |
T |
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