View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18607_high_10 (Length: 324)
Name: NF18607_high_10
Description: NF18607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18607_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 5 - 306
Target Start/End: Complemental strand, 43340505 - 43340204
Alignment:
| Q |
5 |
gcaagcttgacagatacataattaatataaatcacaaaggtccaatataaatacaagaccacccctagctgcataacatgatcaactcctgcagctccac |
104 |
Q |
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| T |
43340505 |
gcaagcttgacagatacataattaatataaatcacaaaggtccaatataaatacaagaccacccctaactgcataacatgatcaactcctgcagctccac |
43340406 |
T |
|
| Q |
105 |
gcctccacccaatgaagaaaaaggaaaccatactaatgtaatcaaagaaccagccttacaagcaaacactgatcatatgagcacataaaccgccccacaa |
204 |
Q |
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| T |
43340405 |
gcctccacccaatgaagaaaacggaaaccatactaatgtaatcaaagaaccagccttaaaagcaaacactgatcatatgagcacataaaccgccccacaa |
43340306 |
T |
|
| Q |
205 |
cacttcagttcagctccctgcgaacactacatacgcacaagaactgatatgagcaaaacagaaccagccactaccaacatcaaaagcagtcgacgatcat |
304 |
Q |
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| T |
43340305 |
cacttcagttcagctccctgcgaacactacatacgcacaagaactgatatgagcaaaacagaaccagccactaccaacatcaaaagcagtcgacgatcat |
43340206 |
T |
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| Q |
305 |
at |
306 |
Q |
| |
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|| |
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| T |
43340205 |
at |
43340204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 1014565 - 1014670
Alignment:
| Q |
179 |
atatgagcacataaaccgccccacaacacttcagttcagctccctgcgaacactacatacgcacaagaactgatatgagcaaaacagaaccagccactac |
278 |
Q |
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| T |
1014565 |
atatgagcacagaaccagccccacaacccttcagttcagctccctgcaaacaccagacccgcacagaaactgatacgagtaaaatagaaagagccactac |
1014664 |
T |
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| Q |
279 |
caacat |
284 |
Q |
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| T |
1014665 |
aaacat |
1014670 |
T |
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