View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18607_high_11 (Length: 287)
Name: NF18607_high_11
Description: NF18607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18607_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 39579710 - 39579967
Alignment:
| Q |
14 |
tactacaagtacaacatcgacattttagtccaaaattgtgttgaacatgtgtgtaattaataaatttagaacaacctatgaagaggttatgtacctgatc |
113 |
Q |
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| T |
39579710 |
tactacaagtacaacatcgacattttagtccaaaattgtgttgaacatgtgtgtaattaataaatttagaacaacctatgaagaggttatgtacctgatc |
39579809 |
T |
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| Q |
114 |
ccatagcatgtctgatgtctctctaatcaagtggatgcaatatcttgcatcgatttttcgaatagtgcatggcaactctgaaatatgttcaagcttcaca |
213 |
Q |
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| T |
39579810 |
ccatagcatgtctgatgtctctctagtcaagtggatgcaatctcttgcatcgatttttcgaatagtgcatggcaactctgaaatatgttcaagcttcaca |
39579909 |
T |
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| Q |
214 |
caaccatgaacattcagaatgctcaagttggtacattcaggaattttttgaagcatat |
271 |
Q |
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| T |
39579910 |
caaccatgaacattcagaatgctcaagttggtacattcaggaattttttgaagcatat |
39579967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 84 - 271
Target Start/End: Complemental strand, 39622497 - 39622310
Alignment:
| Q |
84 |
acaacctatgaagaggttatgtacctgatcccatagcatgtctgatgtctctctaatcaagtggatgcaatatcttgcatcgatttttcgaatagtgcat |
183 |
Q |
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|||| |||| ||||||| | ||||||||| ||||| ||| || || ||||||||| ||||| ||||||| ||||||||||| | |||| ||||||||||| |
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| T |
39622497 |
acaagctataaagaggtgaagtacctgataccataacatctccgacgtctctctattcaagcggatgcagtatcttgcatctactttttgaatagtgcat |
39622398 |
T |
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| Q |
184 |
ggcaactctgaaatatgttcaagcttcacacaaccatgaacattcagaatgctcaagttggtacattcaggaattttttgaagcatat |
271 |
Q |
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| T |
39622397 |
ggcaactctgatatgtgttcaagcatcacacaaccgtaaacattcagaattcttaagttgatgcatacaggaatttctcgaagcatat |
39622310 |
T |
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