View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18607_high_12 (Length: 284)
Name: NF18607_high_12
Description: NF18607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18607_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 39851665 - 39851921
Alignment:
| Q |
7 |
atagtaccttgtgaaacaaatggaaacccgttgagctgaattcgacagtcttaggttgtggagaattctagaatgttgttttttcc----gag-tgaata |
101 |
Q |
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| T |
39851665 |
atagtaccttgtgaaacaaatggaaacccgttgagctgaattcgacagtcttaggttgtggagaattctagaatgttgttttttcccgttgagctgaata |
39851764 |
T |
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| Q |
102 |
agggtttggtttcgaataggtttaggttgagttgttttgtgtgtgttaaaagaagaaaatgaatgaatgggaagaagtagcatttagttattcatcttgg |
201 |
Q |
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| T |
39851765 |
agggtttggtttcgaataggtttaggttgagttgttttgtgtgtgttgaaagaagaaaatgaatgaatgggaagaagtagcatttagttattcatcttgg |
39851864 |
T |
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| Q |
202 |
aaaacaaaatactaaaaagtgtgtgcgagttcatatctatatgaaattcacttcata |
258 |
Q |
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| T |
39851865 |
aaaacaaaatactaaaaagtgtgtgcgagttcatatatatatgaaattcacttcata |
39851921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 253 - 284
Target Start/End: Original strand, 39851933 - 39851964
Alignment:
| Q |
253 |
ttcataaacagcatgaaagtgtcttttccaac |
284 |
Q |
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| T |
39851933 |
ttcataaacagcatgaaagtgtcttttccaac |
39851964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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