View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18607_high_4 (Length: 420)
Name: NF18607_high_4
Description: NF18607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18607_high_4 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 31724151 - 31723749
Alignment:
| Q |
18 |
gttttcagtcaaatgttaaagaataggagaatagttttaccaacaatgctcctcctgaatctgcagaaaaaataaacagcaagtaaaagcattcccaaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31724151 |
gttttcagtcaaatgttaaagaataggagaatagttttaccaacaatgctcctcctgaatctgcagaaaaaataaacagcaagtaaaagcattcccaaag |
31724052 |
T |
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| Q |
118 |
ctgcacacactgtaattactactatttttctcgtgttcctcctgtcgttgactttatctaaacatcaaaaccgtagttaaattacattttcaaatagcct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| |
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| T |
31724051 |
ctgcacacactgtaattactactatttttctcgtgttcttcctgtcgttgactttatctaaacataaaaaccatcgttaaattacattttcaaatagcct |
31723952 |
T |
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| Q |
218 |
taaattgtcaaagaataataaaaggaaaaaattattgaaattaatgaagtattcacctaattctgaaacaggcatcctgatatatagaacttgcccacca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31723951 |
taaattgtcaaagaataataaaaggaaaaaattattgaaattaatgaagtattcacctaattctgaaacaggcatccttatatatagaacttgcccacca |
31723852 |
T |
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| Q |
318 |
tctggaataagtttgatatcagttaaatcaccgaaccacataacacaaccactccgtgctccacttatatttgtatttgtataagccatgcaggaacagt |
417 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31723851 |
tctggaatatgtttgatatcagttaaatcaccgaaccacataacacaaccactccgtgctccacttatatttgtatttgtataagccatgcaggaacagt |
31723752 |
T |
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| Q |
418 |
tat |
420 |
Q |
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||| |
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| T |
31723751 |
tat |
31723749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 45 - 420
Target Start/End: Complemental strand, 31716899 - 31716504
Alignment:
| Q |
45 |
agaatagttttaccaacaatgctcctcctgaatctgcagaaaaaataaacagcaagtaaaagcattcccaaagctgcacacactgtaattactactattt |
144 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||| | ||||||||||| |||||| |
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| T |
31716899 |
agaatagttttaccaacaatgctcctcctgagtctgtagaaaaaataaatagcaagtaaaagcattcccaaagctgcagaaactgtaattacagctattt |
31716800 |
T |
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| Q |
145 |
ttctcgtgttcctcctgtc------------------gttgactttatctaaacatcaaaaccgtagttaaattacattttcaaata---gccttaaatt |
223 |
Q |
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|||| ||||||||||||| |||| ||||||||||||| ||| |||||||||| ||||||||| || | ||||||| |
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| T |
31716799 |
ttcttgtgttcctcctgtgctcatcctcaatactattgttgcctttatctaaacaaagcaact-tagttaaattccattttcaattacaagatttaaatt |
31716701 |
T |
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| Q |
224 |
gtcaaagaataataaaaggaaaaaattattgaaattaatgaagtattcacctaattctgaaacaggcatcctgatatatagaacttgcccaccatctgga |
323 |
Q |
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|||||||||| |||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| |
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| T |
31716700 |
ctcaaagaatattaaaaggaaaaatttggtgaaattaatgaagtattcacctaattctgaagcaggcatcctgatatatagaaattgcccaccacctgga |
31716601 |
T |
|
| Q |
324 |
ataagtttgatatcagttaaatcaccgaaccacataacacaaccactccgtgctccacttatatttgtatttgtataagccatgcaggaacagttat |
420 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||| ||||| |||| |
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| T |
31716600 |
ataagtttgatatcgattaaatcaccaaaccacataacacaaccacttcctgcgccacttatatttgtatttgtatatgccatgcatgaacaattat |
31716504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 45 - 420
Target Start/End: Complemental strand, 31722773 - 31722378
Alignment:
| Q |
45 |
agaatagttttaccaacaatgctcctcctgaatctgcagaaaaaataaacagcaagtaaaagcattcccaaagctgcacacactgtaattactactattt |
144 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||| | ||||||||||| |||||| |
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| T |
31722773 |
agaatagttttaccaacaatgctcctcctgagtctgtagaaaaaataaatagcaagtaaaagcattcccaaagctgcagaaactgtaattacagctattt |
31722674 |
T |
|
| Q |
145 |
ttctcgtgttcctcctgtc------------------gttgactttatctaaacatcaaaaccgtagttaaattacattttcaaata---gccttaaatt |
223 |
Q |
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|||| ||||||||||||| |||| ||||||||||||| ||| |||||||||| ||||||||| || | ||||||| |
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| T |
31722673 |
ttcttgtgttcctcctgtgctcatcctcaatactattgttgcctttatctaaacaaagcaact-tagttaaattccattttcaattacaagatttaaatt |
31722575 |
T |
|
| Q |
224 |
gtcaaagaataataaaaggaaaaaattattgaaattaatgaagtattcacctaattctgaaacaggcatcctgatatatagaacttgcccaccatctgga |
323 |
Q |
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|||||||||| |||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| |
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| T |
31722574 |
ctcaaagaatattaaaaggaaaaatttggtgaaattaatgaagtattcacctaattctgaagcaggcatcctgatatatagaaattgcccaccacctgga |
31722475 |
T |
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| Q |
324 |
ataagtttgatatcagttaaatcaccgaaccacataacacaaccactccgtgctccacttatatttgtatttgtataagccatgcaggaacagttat |
420 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||| ||||| |||| |
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| T |
31722474 |
ataagtttgatatcgattaaatcaccaaaccacataacacaaccacttcctgcgccacttatatttgtatttgtatatgccatgcatgaacaattat |
31722378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 253 - 420
Target Start/End: Complemental strand, 31701363 - 31701196
Alignment:
| Q |
253 |
tgaaattaatgaagtattcacctaattctgaaacaggcatcctgatatatagaacttgcccaccatctggaataagtttgatatcagttaaatcaccgaa |
352 |
Q |
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|||||||| |||||| |||||||||||| ||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| || |
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| T |
31701363 |
tgaaattagtgaagttttcacctaattccgaagcaggcatcctgatatatagaccttgcccaccaactggaataagtttgatatcaattaaatcaccaaa |
31701264 |
T |
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| Q |
353 |
ccacataacacaaccactccgtgctccacttatatttgtatttgtataagccatgcaggaacagttat |
420 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| ||||| |||| |
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| T |
31701263 |
ccacataacacaaccacttcctgctccacttatatttgtatttgtataggccatgcatgaacaattat |
31701196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 31701619 - 31701476
Alignment:
| Q |
19 |
ttttcagtcaaatgttaaagaataggagaatagttttaccaacaatgctcctcctgaatctgcagaaaaaataaacagcaagtaaaagcattcccaaagc |
118 |
Q |
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|||| |||||||| ||| ||||| | |||||||| |||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||| |
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| T |
31701619 |
tttttagtcaaatattagagaatggaagaatagtattaccaacaatgctcctcctgagtctgtagaaaaaataaatagcaagtaaaagcattcccaaagc |
31701520 |
T |
|
| Q |
119 |
tgcacacactgtaattactactatttttctcgtgttcctcctgt |
162 |
Q |
| |
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|||| | ||||| ||||| ||||||||||||| |||| |||||| |
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| T |
31701519 |
tgcagaaactgttattacaactatttttctcgagttcgtcctgt |
31701476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 415
Target Start/End: Complemental strand, 31731816 - 31731745
Alignment:
| Q |
344 |
atcaccgaaccacataacacaaccactccgtgctccacttatatttgtatttgtataagccatgcaggaaca |
415 |
Q |
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|||||| ||||||||||||||||| |||| | |||||||||| |||| ||||||||||||||| || ||||| |
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| T |
31731816 |
atcaccaaaccacataacacaaccgctcccttctccacttatgtttgaatttgtataagccatacaagaaca |
31731745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 31739471 - 31739407
Alignment:
| Q |
351 |
aaccacataacacaaccactccgtgctccacttatatttgtatttgtataagccatgcaggaaca |
415 |
Q |
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||||||||||| |||||||||| | |||||||||| || | ||||||||||||||| || ||||| |
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| T |
31739471 |
aaccacataacgcaaccactcccttctccacttatgttagaatttgtataagccatacaagaaca |
31739407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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