View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18607_high_7 (Length: 366)
Name: NF18607_high_7
Description: NF18607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18607_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 50235006 - 50234657
Alignment:
| Q |
1 |
accttcattaataagtgacacgtagattttagcggctaaacctggagcggttgaaagtgtaggcaattgtgcatggcttccaatgatatcaaaaagtttt |
100 |
Q |
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| T |
50235006 |
accttcattaataagtgacacgtagattttagcggctaaacctggagcggttgaaagtgtaggcaattgtgcatggcttccaatgatatcaaaaagtttt |
50234907 |
T |
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| Q |
101 |
ttctcatcgtagaattcaggtataacatgggtcccaataacggctttaatggcgtcaattggtttaccagaaagagaagcaatagctttgttgtcaaggg |
200 |
Q |
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| T |
50234906 |
ttctcatcgtagaattcaggtataacatgggtcccaataacggctttaatggcgtcaattggtttaccagaaagagaagcaatagctttgttgtcaaggg |
50234807 |
T |
|
| Q |
201 |
caagaatggtaacggctttaccactgtttatttgttcagccaacttggtttcggttaggtatttgctgaacgtggagagttccggatattgtcccaaagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50234806 |
caagaatggtaacggctttaccactgtttatttgttcagccaacttggtttcggttaggtatttgctgaacgtggagagttccggatattgtcccaaagt |
50234707 |
T |
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| Q |
301 |
tttggttatgtccaaacaattaatcgccgaagagaaagacaacataagtg |
350 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50234706 |
tttggttatgtccaaacaattaatggccgaagagaaagacaacataagtg |
50234657 |
T |
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