View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18607_high_8 (Length: 353)
Name: NF18607_high_8
Description: NF18607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18607_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 335
Target Start/End: Complemental strand, 28915123 - 28914803
Alignment:
| Q |
15 |
acatcatcaggtatccatagatcaagtttgagacttaagctagaggatattaatttttgtagctatctactagtctactgatataccaatttctttgcaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28915123 |
acatcatcaggtatccatagatcaagtttgagacttaagctagaggatattaatttttgtagctatctactagtctactgatataccaatttctttgcaa |
28915024 |
T |
|
| Q |
115 |
tcaagcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaacacatgcttgataaaatcta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28915023 |
tcaagcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaacacatgcttgataaaatcta |
28914924 |
T |
|
| Q |
215 |
atattcattttttcgtttggtaattaaaatgtaaaggtagtagccaatacatgttttgactcttcgacattgatgtcaacgtctatttattccattgtag |
314 |
Q |
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| T |
28914923 |
atattcattttttcgtttggtaattaaaatgtaaaggtagtagccaacacatgttttgactcttcgacattgatgtcaacgtctatttattccattgtag |
28914824 |
T |
|
| Q |
315 |
aaattatagaaagctatatct |
335 |
Q |
| |
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||||||||||||||||||||| |
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| T |
28914823 |
aaattatagaaagctatatct |
28914803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 96 - 333
Target Start/End: Complemental strand, 28924272 - 28924035
Alignment:
| Q |
96 |
tataccaatttctttgcaatcaagcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaac |
195 |
Q |
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|||||||||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |
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| T |
28924272 |
tataccaatttcttcaaaatctagccttaaattaatgctgttcacttgtttcaactattcttttgcctgaaatataaatgtaacagatcctcaccttacc |
28924173 |
T |
|
| Q |
196 |
acatgcttgataaaatctaatattcattttttcgtttggtaattaaaatgtaaaggtagtagccaatacatgttttgactcttcgacattgatgtcaacg |
295 |
Q |
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|||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||||| | |
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| T |
28924172 |
acatgcttgataaaatctaatattcattattttgtttgataattaaaatgtaaaggtagtagccagtgcatgttttgactctttgacattgaagtcaaag |
28924073 |
T |
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| Q |
296 |
tctatttattccattgtagaaattatagaaagctatat |
333 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||| |
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| T |
28924072 |
tctatttcttccattgtagaaatcatagaaagctatat |
28924035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 28900684 - 28900369
Alignment:
| Q |
19 |
catcaggtatccatagatcaagtttgagacttaagctagaggatattaatttttgtagctatctactagtctactgatataccaatttctttgcaatcaa |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||| |||||||| |||| |||||||||| ||||| || |||||||||||||| |||| | |
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| T |
28900684 |
catcaggtatccatagatcaagcttgagacataagctagagtatattaatatttgcagctatctacgagtcttctattataccaatttcttcaaaatcta |
28900585 |
T |
|
| Q |
119 |
gcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaacacatgcttgataaaatctaatat |
218 |
Q |
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|| || |||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||||||||||||||| | || |
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| T |
28900584 |
gcctttaatttatcctagtcacttgtttcaactattcttttgcc-gaaatataaatgcaacagaccctcaccttaccacatgcttgataaaatcttaaat |
28900486 |
T |
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| Q |
219 |
tcattttttcgtttggtaattaaaatgtaaaggtagtagccaatacatgttttgactcttcgacattgatgtcaacgtct-atttattccattgtagaaa |
317 |
Q |
| |
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||||| || ||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||| ||| | || |||| |||| ||| |||||||||| |
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| T |
28900485 |
tcattactttgtttggtaattaacatgttaaggtagtagccaatacat-ttttgactcttcaacaatgaagcaaatgtctaatttcttcaattgtagaaa |
28900387 |
T |
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| Q |
318 |
ttatagaaagctatatct |
335 |
Q |
| |
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| |||||||||||||||| |
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| T |
28900386 |
tcatagaaagctatatct |
28900369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 28933225 - 28932966
Alignment:
| Q |
19 |
catcaggtatccatagatcaagtttgagacttaagctagaggatattaatttttgtagctatctactagtctactgatataccaatttctttgcaatcaa |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||||||||||||||||| |||||||||||||| |||| | |
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| T |
28933225 |
catcaggtatccatagatcaagtttgagacttaagctagagtattttaatatttatagctatctactagtctactactataccaatttcttcaaaatcta |
28933126 |
T |
|
| Q |
119 |
gcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaacacatgcttgataaaatctaatat |
218 |
Q |
| |
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| || |||||||||||| | ||||| ||||||||||||||||| ||||||||||||| ||| | ||| | |||||||| ||||| |||| || | |
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| T |
28933125 |
tccttcggttaatgctattcgcatgtttaaactattcttttgcctg-aatataaatgcaatggattcatgccttaccacatgctggataatatctcatgt |
28933027 |
T |
|
| Q |
219 |
tcattttttcgtttggtaa-ttaaaatgtaaaggtagtagccaatacatgttttgactcttc |
279 |
Q |
| |
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|||| || | | ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28933026 |
tcatattat-gcttggtaagttaaaatgtaaaggtagtagccaatacatgttttgactcttc |
28932966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 28924334 - 28924286
Alignment:
| Q |
19 |
catcaggtatccatagatcaagtttgagacttaagctagaggatattaa |
67 |
Q |
| |
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||||||||||||||| |||||| |||||| ||||||| ||| ||||||| |
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| T |
28924334 |
catcaggtatccatatatcaagattgagatttaagctggagcatattaa |
28924286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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