View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18607_low_12 (Length: 402)
Name: NF18607_low_12
Description: NF18607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18607_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 9820185 - 9820513
Alignment:
| Q |
13 |
aatatcaaatgaagaaataggaaaatatacagagttcagatttcagatttcaggtgcgtattaactttctgtctgcatcaagcattccctaatatatctc |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9820185 |
aataccaaatgaagaaataggaaaatatacagagttcagatttcagatttcaggtgcgtattaactttctgtctgcagcaagcattccctaatatatctc |
9820284 |
T |
|
| Q |
113 |
tccattgttctgttccttccgtattaattagagccaacagcatagatacacttaggaatctgtcacatgctcgcgagaaaatgaggtccatcagtcactg |
212 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9820285 |
tccattgtt-----ccttccgtattaattagagccaacagcatagatacacttaggaatctgtcacatgctcgcgagaaaatgagggccatcagtcactg |
9820379 |
T |
|
| Q |
213 |
gaaaagcaaagataaaatgcaacaatgatcttagaatcagacatatttctaccacaaagatcaacttaactcacagtaaagtaatgacagtatgggttca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9820380 |
gaaaagcaaagataaaatgcaacaatgatcttagaatcagacatatttctaccaaaaagatcaacttaactcacagtaaagtaatgacagtatgggttca |
9820479 |
T |
|
| Q |
313 |
aaatgtatgtttcactaacaaatataaacttacc |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
9820480 |
aaatgtatgtttcactaacaaatataaacttacc |
9820513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 9821130 - 9821182
Alignment:
| Q |
350 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9821130 |
atcatatggagcactgcttgacgtaaatacgaaagaaccttcaccattccagc |
9821182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 195 - 346
Target Start/End: Original strand, 38873994 - 38874145
Alignment:
| Q |
195 |
gaggtccatcagtcactggaaaagcaaagataaaatgcaacaatgatcttagaatcagacatatttctaccacaaagatcaacttaactcacagtaaagt |
294 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| |||||||| | |||| |
|
|
| T |
38873994 |
gagggccatcagtcactggaaaagtaaagataaaatgcaacaatgatctcagaatcatacgtatttctaccacaaagatcaactcaactcacaatgaagt |
38874093 |
T |
|
| Q |
295 |
aatgacagtatgggttcaaaatgtatgtttcactaacaaatataaacttacc |
346 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
38874094 |
aatgacagtataagttcaagatgtatgtttcactaagaaatataaacttacc |
38874145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 38873752 - 38873924
Alignment:
| Q |
13 |
aatatcaaatgaagaaataggaaaatatacagagttcagatttcagatttcaggtgcgtattaactttctgtctgcatcaagcattccctaatatatctc |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||| | || |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38873752 |
aataccaaatgaagaaataggaaaatatacaaagttcagatttcag-------gcacgcattaactttctgtctgcagcaagcattccctaatatatctc |
38873844 |
T |
|
| Q |
113 |
tccattgttctgttccttccgtattaattagagccaacagcatagatacacttaggaatctgtcacatgctcgcgagaaaatgag |
197 |
Q |
| |
|
|| ||||||| ||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38873845 |
tctattgttc-----cttccacattaattagagccaacagcaaagatgcacttaggaatctgtcacatgctcgcgagaaaatgag |
38873924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 38875382 - 38875434
Alignment:
| Q |
350 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagc |
402 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| |
|
|
| T |
38875382 |
atcatatggagcactacttgaagtaaatatgaaagaacctccaccattccagc |
38875434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 38694447 - 38694279
Alignment:
| Q |
21 |
atgaagaaataggaaaatatacagagttcagatttcagatttcaggtgcgtattaactttctgtctgcatcaagcattccctaatatatctctccattgt |
120 |
Q |
| |
|
||||||||||||||||||||| | || | ||||||||||| | |||||||||||||||||||||| ||||||||||||||||| |||||| | | |
|
|
| T |
38694447 |
atgaagaaataggaaaatatata-----cacagttcagatttcaagcgcgtattaactttctgtctgcagcaagcattccctaatatctctctc---tct |
38694356 |
T |
|
| Q |
121 |
tctgttccttccgtattaattagagccaacagcatagatacacttaggaatctgtcacatgctcgcgagaaaatgag |
197 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38694355 |
attgttccttccgcattaattagagccaacagcaaagatgcacttaggaatctgtcacatgctcgcgagaaaatgag |
38694279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 38693718 - 38693666
Alignment:
| Q |
350 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagc |
402 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38693718 |
atcatatgaagcactgcttgacgtaaatgcaaaagaaccttcaccattccagc |
38693666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 38694203 - 38694151
Alignment:
| Q |
200 |
ccatcagtcactggaaaagcaaa-gataaaatgcaacaatgatcttagaatca |
251 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |
|
|
| T |
38694203 |
ccatcagtcactggaaaggaaaacgataaaatgcaacaatgatcttagaatca |
38694151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University