View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18607_low_15 (Length: 330)
Name: NF18607_low_15
Description: NF18607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18607_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 37108700 - 37108400
Alignment:
| Q |
17 |
aacaggaaactgattggagcaaggtatttcaacaaaggctatgcttcgagactaactgtcccactaaattcttcctttgaaacacctcgtgacaatgaag |
116 |
Q |
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| T |
37108700 |
aacaggaaactgattggagcaaggtatttcaacaaaggctatgcttcgagactaactgtcccactaaattcttcctttgaaacacctcgtgacaatgaag |
37108601 |
T |
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| Q |
117 |
gtcatggatctcatactttatcaacagccggtggaaacatggtacctggagtcagtgtcttcggtcaagggtatggaacagcaaagggtggttcaccaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37108600 |
gtcatggatctcatactttatcaacagccggtggaaacatggtacctggagtcagtgtcttcggtcaaggctatggaacagcaaagggtggttcaccaaa |
37108501 |
T |
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| Q |
217 |
agcaagagttgcatcatacaaagtttgttggcctccaattaatggcgacgagtgctttgatgcagacatacttgcagcatttgatgcagctatccatgat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37108500 |
agcaagagttgcatcatacaaagtttgttggcctccaattaatggcgacgagtgctttgatgcagacatacttgcagcatttgatgcagctatccatgat |
37108401 |
T |
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| Q |
317 |
g |
317 |
Q |
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| T |
37108400 |
g |
37108400 |
T |
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