View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18607_low_2 (Length: 722)

Name: NF18607_low_2
Description: NF18607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18607_low_2
NF18607_low_2
[»] chr4 (1 HSPs)
chr4 (24-704)||(44959914-44960594)


Alignment Details
Target: chr4 (Bit Score: 681; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 24 - 704
Target Start/End: Original strand, 44959914 - 44960594
Alignment:
Q  24 ggaagaattacctaattgttgacctggtaacaaagccataggttgtggaaaattcataaaatgcaaaccactagttgaaactgctcctctatacaaagca 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44959914 ggaagaattacctaattgttgacctggtaacaaagccataggttgtggaaaattcataaaatgcaaaccactagttgaaactgctcctctatacaaagca 44960013  T
Q  124 gcagcactattattcactgacggaaaagtccatataggatcaccaccactcattatttggttattagaatttgcaaccatccatatatttgccggaatct 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44960014 gcagcactattattcactgacggaaaagtccatataggatcaccaccactcattatttggttattagaatttgcaaccatccatatatttgccggaatct 44960113  T
Q  224 gagtatgacttgctggaattgaacctgcacttgattgcatcagataactccccatttgatgttgtaatgatgataaatcttgctcactgccaccactgct 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44960114 gagtatgacttgctggaattgaacctgcacttgattgcatcagataactccccatttgatgttgtaatgatgataaatcttgctcactgccaccactgct 44960213  T
Q  324 agttcttctttttcttcctcccatggattcttctccacttgtttcagataaatctaacgtggttgatgaagaaggagcgttcgcgttagcgtttgagttt 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44960214 agttcttctttttcttcctcccatggattcttctccacttgtttcagataaatctaacgtggttgatgaagaaggagcgttcgcgttagcgtttgagttt 44960313  T
Q  424 gtgtttccatctcgaacctcttgtttagcctgcaacatatttgttaggttatttgattggaaattcaaaagcattgaagtgttgttgttgctgttgttat 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44960314 gtgtttccatctcgaacctcttgtttagcctgcaacatatttgttaggttatttgattggaaattcaaaagcattgaagtgttgttgttgctgttgttat 44960413  T
Q  524 ctgaaggagataaaccaattccaggaaaaagagttcttcgttgttgaagtgagaaattcgggttgaagtaagaagatcttagctgagatggaacagacat 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44960414 ctgaaggagataaaccaattccaggaaaaagagttcttcgttgttgaagtgagaaattcgggttgaagtaagaagatcttagctgagatggaacagacat 44960513  T
Q  624 ggatgagcctgagctacgaagtgagatattgagagatgtgaagttagcaggtatagttccagtaccagtggcggctataac 704  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44960514 ggatgagcctgagctacgaagtgagatattgagagatgtgaagttagcaggtatagttccagtaccagtggcggctataac 44960594  T

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