View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18607_low_21 (Length: 281)
Name: NF18607_low_21
Description: NF18607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18607_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 30853367 - 30853120
Alignment:
| Q |
19 |
tatattgtattttcttgactcactcacaaaagacgagtcatggaaactcatgttgtca-cataagattattctaaatttatgggtggtcttttctcaaaa |
117 |
Q |
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| T |
30853367 |
tatattgtattttcttgactcactcacaaaagacgagtcatggaaactcatgttgtcaacataagattattctaaatttatgggcggtcttttctcaaaa |
30853268 |
T |
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| Q |
118 |
ttnnnnnnncgtaaagtccaactcaacttctttcatttcatggaagagatttaagtttctactcaagcaacattcatgccataaatttcttgagatgaaa |
217 |
Q |
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| T |
30853267 |
ttaaaaaaacgtatagtccaactcaacttctttcatttcatgggagagagttaagtttctactcaagcaacattcatgccacaaatttcttgagatgaaa |
30853168 |
T |
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| Q |
218 |
ttaccttaa-tttaaccaatggtttgaagccacaaacttgaatgctct |
264 |
Q |
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| T |
30853167 |
ttaccttaattttaaccaatggtttgaagtcacaaacttgaatgctct |
30853120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 15077128 - 15077187
Alignment:
| Q |
22 |
attgtattttcttgactcactcacaaaagacgagtcatggaaactcatgttgtcacataa |
81 |
Q |
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| T |
15077128 |
attgcattttcttgactcactcacaaaagataagttatggaaactcatgttgtcatataa |
15077187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 15077248 - 15077346
Alignment:
| Q |
127 |
cgtaaagtccaactcaacttctttcatttcatggaagagatttaagtttctactcaagcaacattcatgccataaatttcttgagatgaaattaccttaa |
226 |
Q |
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| T |
15077248 |
cgtaaagtcctcctcaacttcttccatttcttgggagagatttgagtttctactc-ggcaatgttcagggcacaaattttctgagatgaaattactttaa |
15077346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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