View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18607_low_23 (Length: 247)
Name: NF18607_low_23
Description: NF18607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18607_low_23 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 31723292 - 31723532
Alignment:
| Q |
7 |
gagatgaagcctaattctattttcagttacaattttgtctgcaataaagaagaggtttattacacatggaacatcaaagatagtactcaaatatcaaaag |
106 |
Q |
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| T |
31723292 |
gagatgaagcctaattctattttcagttacaattttgtctgcaataaagaagaggtttattacacatggaacatcaaagatagtactcaaatatcaaaag |
31723391 |
T |
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| Q |
107 |
tggtacttaaccaaaccagtaacgatcgtccacgatacgtatggtcaaaggacgacgaatcatggaatatttattcaagaataccaggagacgattgtga |
206 |
Q |
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| T |
31723392 |
tggtacttaaccaaaccagtaacgatcgtccacgatacgtatggtcaaaggacgacaaatcatggaatatttattcaagaataccaggagacgattgtga |
31723491 |
T |
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| Q |
207 |
ccattatggtcgatgtggagtcaatggatattgcagcattt |
247 |
Q |
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| T |
31723492 |
ccattatggtcgatgtggagtcaatggatattgcagcattt |
31723532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 31716051 - 31716284
Alignment:
| Q |
11 |
tgaagcctaattctattttcagttacaattttgtctgcaataaagaagaggtttattacacatggaacatcaaagatagtactcaaatatcaaaagtggt |
110 |
Q |
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| T |
31716051 |
tgaagcctaatgatattttcagttacaattttgtctggaataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggt |
31716150 |
T |
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| Q |
111 |
acttaaccaaaccagtaacgatcgtccacgatacgtatggtcaaaggacgacgaatcatggaatatttattcaagaataccaggagacgattgtgaccat |
210 |
Q |
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| T |
31716151 |
acttaaccaaaccagtaaagatcgtccacgctacgtatggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccat |
31716250 |
T |
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| Q |
211 |
tatggtcgatgtggagtcaatggatattgcagca |
244 |
Q |
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| T |
31716251 |
tatggtcaatgtggagtcaatggatattgtagca |
31716284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 31721925 - 31722158
Alignment:
| Q |
11 |
tgaagcctaattctattttcagttacaattttgtctgcaataaagaagaggtttattacacatggaacatcaaagatagtactcaaatatcaaaagtggt |
110 |
Q |
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| T |
31721925 |
tgaagcctaatgatattttcagttacaattttgtctggaataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggt |
31722024 |
T |
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| Q |
111 |
acttaaccaaaccagtaacgatcgtccacgatacgtatggtcaaaggacgacgaatcatggaatatttattcaagaataccaggagacgattgtgaccat |
210 |
Q |
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| T |
31722025 |
acttaaccaaaccagtaaagatcgtccacgctacgtatggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccat |
31722124 |
T |
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| Q |
211 |
tatggtcgatgtggagtcaatggatattgcagca |
244 |
Q |
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| T |
31722125 |
tatggtcaatgtggagtcaatggatattgtagca |
31722158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 44 - 244
Target Start/End: Original strand, 31700776 - 31700976
Alignment:
| Q |
44 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagtactcaaatatcaaaagtggtacttaaccaaaccagtaacgatcgtccacgata |
143 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| | || |||||||| || |
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| T |
31700776 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggtacttaaccaaaccagttatgaacgtccacgcta |
31700875 |
T |
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| Q |
144 |
cgtatggtcaaaggacgacgaatcatggaatatttattcaagaataccaggagacgattgtgaccattatggtcgatgtggagtcaatggatattgcagc |
243 |
Q |
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| T |
31700876 |
catatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactattgtgaccactatggtctatgtggagtcaatggatactgcagc |
31700975 |
T |
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| Q |
244 |
a |
244 |
Q |
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| T |
31700976 |
a |
31700976 |
T |
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