View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18607_low_25 (Length: 237)

Name: NF18607_low_25
Description: NF18607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18607_low_25
NF18607_low_25
[»] chr3 (1 HSPs)
chr3 (15-221)||(8524854-8525060)
[»] chr5 (7 HSPs)
chr5 (17-221)||(42125401-42125605)
chr5 (19-221)||(41711784-41711986)
chr5 (21-190)||(42118803-42118973)
chr5 (19-193)||(42130628-42130802)
chr5 (17-221)||(34238855-34239059)
chr5 (25-221)||(34230800-34231008)
chr5 (63-190)||(41570045-41570172)
[»] chr6 (1 HSPs)
chr6 (17-221)||(25521020-25521224)
[»] chr4 (1 HSPs)
chr4 (24-221)||(11120182-11120379)
[»] chr2 (1 HSPs)
chr2 (17-188)||(12250222-12250393)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 8524854 - 8525060
Alignment:
Q  15 gcaaaggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttgaatgaaaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8524854 gcaaaggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttgaatgaaaa 8524953  T
Q  115 taagagccagagaaattattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgagtatgccttgaagaccttcac 214  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8524954 taagagccagagaaatcattgttagcaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgagtatgccttgaagaccttcac 8525053  T
Q  215 aaccaag 221  Q
    | |||||    
T  8525054 agccaag 8525060  T

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Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 42125401 - 42125605
Alignment:
Q  17 aaaggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttgaatgaaaata 116  Q
    ||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||  ||||||| ||||||||||||||| ||||||||||     
T  42125401 aaaggtgtgagatttgaattggaatttcacctttaaagaaactacgagacaagtcaagatgtgcaagactcataaacccaccaaacttagaatgaaaatg 42125500  T
Q  117 agagccagagaaattattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgagtatgccttgaagaccttcacaa 216  Q
    ||||  |||||||| ||||||||||||||||||| |||||| || | |||||| ||||||||||||||||||||  ||| | |||||||| ||||||||     
T  42125501 agagtaagagaaatcattgttagaaaggttgagtgtttgaagatgaacaagattgaaaagggtactgttaggatgtagtttaccttgaaggccttcacag 42125600  T
Q  217 ccaag 221  Q
    |||||    
T  42125601 ccaag 42125605  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 41711986 - 41711784
Alignment:
Q  19 aggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttgaatgaaaataag 118  Q
    ||||||||||||||| ||||||||||||||| || |||||||| ||||| |||||||||||  ||||||||||||| ||||||||| ||||||||||  |    
T  41711986 aggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaaaaccgaccaaacttagaatgaaaatggg 41711887  T
Q  119 agccagagaaattattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgagtatgccttgaagaccttcacaacc 218  Q
    ||  |||||||| ||||| ||||||||||||| |||| | || | ||||||||||||| ||| | ||||||| || ||| |||||||| || ||||| ||    
T  41711886 agtaagagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatggaaaagagtattattaggatggaatataccttgaaggccatcacagcc 41711787  T
Q  219 aag 221  Q
    |||    
T  41711786 aag 41711784  T

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Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 42118803 - 42118973
Alignment:
Q  21 gtgtgagatttgagttggaatttcacctttaaggtaa-ctatgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttgaatgaaaataaga 119  Q
    |||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||  |||    
T  42118803 gtgtgagatttgagttggaatttcacctttaaagaaaactatgagacaagtcaagatgtgtaagactcaaaaaaccaccaaacttagaatgaaaacgaga 42118902  T
Q  120 gccagagaaattattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggat 190  Q
      | ||||||||||||   | |||||| ||| |||| | || | ||||||||||||||||| |||||||||    
T  42118903 agcggagaaattattggatgcaaggtttagtgtttggagatgaacaagatggaaaagggtattgttaggat 42118973  T

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Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 42130628 - 42130802
Alignment:
Q  19 aggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttgaatgaaaataag 118  Q
    ||||| |||||||||||||||||||||||||  | || ||||| |||||||||||||||||| ||||||  ||| |||| ||||||  ||||||||| ||    
T  42130628 aggtgagagatttgagttggaatttcaccttctaagttactatcagacaagtcaagatgtgtaagactctgaaatccacaaaacttataatgaaaatgag 42130727  T
Q  119 agccagagaaattattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattga 193  Q
    || || |||||| ||||| ||||||||||||| |||| | || | ||||||| ||||||||||| ||||||||||    
T  42130728 agtcaaagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatgaaaaagggtactattaggattga 42130802  T

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Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 34239059 - 34238855
Alignment:
Q  17 aaaggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttgaatgaaaata 116  Q
    |||||| |||||||||||  |||||||||||   ||  | | ||| |||||||||||||||||| ||||||  |||||  |||||||| |||| ||||||    
T  34239059 aaaggtatgagatttgagaaggaatttcaccgccaacatgagtattagacaagtcaagatgtgtaagactcgtaaacctgccaaacttagaatcaaaata 34238960  T
Q  117 agagccagagaaattattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgagtatgccttgaagaccttcacaa 216  Q
     || ||| |||||  ||||||||||||||||||| |||| | || | ||| || |||||||||||| ||||||| |||||| |||||||  |||||||||    
T  34238959 ggaaccatagaaaccattgttagaaaggttgagtgtttggagatgaacaatattgaaaagggtactattaggatggagtataccttgaaagccttcacaa 34238860  T
Q  217 ccaag 221  Q
    |||||    
T  34238859 ccaag 34238855  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 34231008 - 34230800
Alignment:
Q  25 gagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttgaatgaaaataagagccag 124  Q
    ||||||||||  ||||||||| ||| || | ||| |  ||||||||| |||||||| ||||||| |||||| |||||||| ||||||||||  |||||||    
T  34231008 gagatttgagaaggaatttcatcttgaaagaaacaagaagacaagtcgagatgtgtaagactcataaacccgccaaacttagaatgaaaatgggagccag 34230909  T
Q  125 agaaatt------------attgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgagtatgccttgaagaccttc 212  Q
    ||||||             |||||| |||||||||||  ||||||  | ||||||||||||||||||||| ||||||| |||||| |||||||  |||||    
T  34230908 agaaatcgttagagaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtactattaggatggagtataccttgaaagccttc 34230809  T
Q  213 acaaccaag 221  Q
    ||| |||||    
T  34230808 acagccaag 34230800  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 190
Target Start/End: Complemental strand, 41570172 - 41570045
Alignment:
Q  63 agacaagtcaagatgtgtgagactcaaaaacccaccaaactttgaatgaaaataagagccagagaaattattgttagaaaggttgagtttttgaatataa 162  Q
    |||||||||||||||||| ||||||  ||| ||||||||||  ||||| ||||  |||    |||||| ||||| |||||||||||||  ||| | || |    
T  41570172 agacaagtcaagatgtgtaagactcttaaatccaccaaactgagaatgcaaattggagttgaagaaatcattgtgagaaaggttgagtgattggagatga 41570073  T
Q  163 gcaagatggaaaagggtactgttaggat 190  Q
    |||||||| ||||| ||  |||||||||    
T  41570072 gcaagatgaaaaagagtgttgttaggat 41570045  T

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Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 25521224 - 25521020
Alignment:
Q  17 aaaggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttgaatgaaaata 116  Q
    ||||||||||||||||||||||||||| |||||||| | |||||  |||||||| ||||||||| ||||||  ||||||||||||||| | ||||||||     
T  25521224 aaaggtgtgagatttgagttggaattttacctttaaagaaactaccagacaagtaaagatgtgtaagactctgaaacccaccaaacttagcatgaaaatg 25521125  T
Q  117 agagccagagaaattattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgagtatgccttgaagaccttcacaa 216  Q
     ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| || ||| ||||| || ||||||||     
T  25521124 ggagccagtgaaatcattgtaagaaaggttgagtttttgaatatgagcaagatggaaaagagtactattaggatggaatataccttggaggccttcacag 25521025  T
Q  217 ccaag 221  Q
    |||||    
T  25521024 ccaag 25521020  T

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Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 221
Target Start/End: Original strand, 11120182 - 11120379
Alignment:
Q  24 tgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttgaatgaaaataagagcca 123  Q
    |||||||||||||||||||||||| | || || ||||| |||||||| ||||||||| ||||||  ||||||||||||||| |||||||||  ||||||     
T  11120182 tgagatttgagttggaatttcaccataaatgttactataagacaagtaaagatgtgtaagactctgaaacccaccaaacttagaatgaaaacgagagccg 11120281  T
Q  124 gagaaattattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgagtatgccttgaagaccttcacaaccaag 221  Q
    |||||||||||||    |||||||||| |||| | || | ||||||||||||||||||| || ||||  | ||||||||||||||||||||| |||||    
T  11120282 gagaaattattgtatacaaggttgagtgtttggagatgaacaagatggaaaagggtactattcggatgtaatatgccttgaagaccttcacagccaag 11120379  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 12250222 - 12250393
Alignment:
Q  17 aaaggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttgaatgaaaata 116  Q
    |||||||||||||||||||||||| ||||||||||| | |||||| |||||||||||||||||| ||| | || || ||||||||||| ||||||||||     
T  12250222 aaaggtgtgagatttgagttggaacttcacctttaaagaaactattagacaagtcaagatgtgtaagattaaagaatccaccaaacttagaatgaaaatg 12250321  T
Q  117 agagccagagaaattattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttagg 188  Q
     |||   ||||||| ||||  ||||||||||||| |||| | || |||||||| |||||||||||| |||||    
T  12250322 ggagtttgagaaatcattggaagaaaggttgagtgtttggagatgagcaagatcgaaaagggtactattagg 12250393  T

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