View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18607_low_26 (Length: 211)
Name: NF18607_low_26
Description: NF18607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18607_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 1514162 - 1513984
Alignment:
| Q |
14 |
attatactaaagataacaggttcttacaatctaaaataaaatgatcaatagcagctatgctatgcaaaccattcacacagtcaaccgccagctttgctat |
113 |
Q |
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| T |
1514162 |
attatactaaagataacaggttcttacaatctaaaataaaatgatcaatagcagctatgctatgcaaaccattcacacagtcaaccgccagctttgctat |
1514063 |
T |
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| Q |
114 |
gcaaattaccttgggaagatgatgcttcaggttgatgaaggattctttgagttgtttgcatatgataagatgagcggac |
192 |
Q |
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| T |
1514062 |
gcaaattaccttgggaagatgatgcttcaggttgatgaaggattctttgagttgtttgcatatgataagatgagcggac |
1513984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 18121185 - 18121093
Alignment:
| Q |
18 |
tactaaagataacaggttcttacaatctaaaataaaatgatcaatagcagctatgctatgcaaaccattcacacagtcaaccgccagctttgc |
110 |
Q |
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| T |
18121185 |
tactaaagataacaagttcttacaatctaaaataaaatgatcaatagcagctatgctatgcaaaccattcacacagtccaccaccagctttgc |
18121093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 18120392 - 18120316
Alignment:
| Q |
116 |
aaattaccttgggaagatgatgcttcaggttgatgaaggattctttgagttgtttgcatatgataagatgagcggac |
192 |
Q |
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| T |
18120392 |
aaattaccttgggaagaggatgcttcaggttgatgaagaattctttgagttgtttgcatatgataagctgagcggac |
18120316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 21435753 - 21435845
Alignment:
| Q |
18 |
tactaaagataacaggttcttacaatctaaaataaaatgatcaatagcagctatgctatgcaaaccattcacacagtcaaccgccagctttgc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
21435753 |
tactaaagataacaggttcttacaatctaaaataaaatgatcaatagcagctatgctatgcaaaccattcacacagtccaccaccagctttgc |
21435845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 21436546 - 21436622
Alignment:
| Q |
116 |
aaattaccttgggaagatgatgcttcaggttgatgaaggattctttgagttgtttgcatatgataagatgagcggac |
192 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
21436546 |
aaattaccttgggaagaggatgcttcaggttgatgaagaattctttgagttgtttgcatatgataagctgagcggac |
21436622 |
T |
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