View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18607_low_3 (Length: 698)
Name: NF18607_low_3
Description: NF18607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18607_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 230 - 696
Target Start/End: Original strand, 224717 - 225183
Alignment:
| Q |
230 |
ttaaaaactagtatcctcactcaccagagttctatacttataggtagaagtaaaagaagggtttaattctgttccttcatcctcacttggtgaatcatca |
329 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
224717 |
ttaaaaactaaaatcctcactcaccagagttctatacttataggtagaagtaaaagaagggtttaattctgttccttcatcctcacttggtgaatcatca |
224816 |
T |
|
| Q |
330 |
gcataattgatttcaaccctggaccttttcataggcctaggacacttggtatttgtttctccactagtacttggagtttttaatggatagcaaatctcaa |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||| || |||||||||||| |||||||||||||||| | ||||||||||||||||| |
|
|
| T |
224817 |
gcataattgatttcaaccctggaccttttcgtaggtctaggacactctgtgtttgtttctccattagtacttggagttttgagtggatagcaaatctcaa |
224916 |
T |
|
| Q |
430 |
cagaagttacatcaaatataataacattaaactttgaattcccttcatatttgaaagacatgaagcaaccgtatcttaaagaatagtattctgcaaactg |
529 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
224917 |
cagaagttacatcaaatataataacactaaactttgaattcccttcatatttgaaagacatgaagcaaccatatcttaaagaatagtattctgcaaattg |
225016 |
T |
|
| Q |
530 |
tttccatttgttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaacattcttgagt |
629 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
225017 |
tttccatttgttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaacattcttgagt |
225116 |
T |
|
| Q |
630 |
tcgctcccatatattgttataaagacttcaggaattctctgcagttattatcacttgtttaattgat |
696 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
225117 |
tcgctcccatatattgttataaagacttcaggaattctctgcagttattatcacttgtttaattgat |
225183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 340 - 696
Target Start/End: Original strand, 210345 - 210704
Alignment:
| Q |
340 |
tttcaaccctggaccttttcataggcctaggacacttggtatttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac |
439 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
210345 |
tttcaaccttggaccttttcataggcctaggacactcggtgtttgtttctccactagtacttggagtttttaatggatagcaaatttcaacagaagttgc |
210444 |
T |
|
| Q |
440 |
atcaaatataataacattaaactttgaattcccttcatatttgaaagacatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccat--- |
536 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
210445 |
atcaaatataataacgctaaaatttgaattcccttcgtatctgaaagacaggaagcaaccgtatcttaaagaatagtattctgcaaactgttgccattcc |
210544 |
T |
|
| Q |
537 |
ttgttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaacattcttgagttcgctcc |
636 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| |||| || |||| | |||||| || ||||||| |||||||||||||| |||||| ||| |
|
|
| T |
210545 |
ttgttgcaaaagtaaacatcctcgccacatttcttcaagtccatttcccaatcacaaccatcgggaacagtaactgtagcaacattctcgagttcattcc |
210644 |
T |
|
| Q |
637 |
catatattgttataaagacttcaggaattctctgcagttattatcacttgtttaattgat |
696 |
Q |
| |
|
|| | |||||||||||| ||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
210645 |
caaacattgttataaagttttctggaattctctgcagttatcatcacttgtttaattgat |
210704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 224472 - 224689
Alignment:
| Q |
19 |
catttatcaccgtttgacaaattgttgtccgttgcaaatttaatgaatcctttccccaatcgcagtcctgaacgacctaaacgtgtacaacaaacatccc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
224472 |
catttatcaccgtttgacaaattgttgtacgttgcaaatttaatgaatcctttccccaatcgcagtcctgaacgacctaaacgtgtacaacaaacatccc |
224571 |
T |
|
| Q |
119 |
attgct---ctccattgcaattttcgagcttcacaacaacatttcgtttcagatgctttgatgcaaaatcagcattaatatactgcacaagggagcgagg |
215 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
224572 |
attgctctcctccattgcaattttggagcttcacaacaacatttcgtttcagatgctttgatgcaaaatcagcattaatatactgcacaagggagcgagg |
224671 |
T |
|
| Q |
216 |
gaggacacatcaatttaa |
233 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
224672 |
taggacacatcaatttaa |
224689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 340 - 674
Target Start/End: Original strand, 221893 - 222227
Alignment:
| Q |
340 |
tttcaaccctggaccttttcataggcctaggacacttggtatttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac |
439 |
Q |
| |
|
|||||||| ||||||||||| |||| ||| ||||||| || |||||||||||| || ||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
221893 |
tttcaaccttggaccttttcctaggactatgacactttgtgtttgtttctccattaatactttgagttttgaatggatagcaaatctcaacagaagttac |
221992 |
T |
|
| Q |
440 |
atcaaatataataacattaaactttgaattcccttcatatttgaaagacatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttg |
539 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||| || |||| |||| || | || ||||||||||||||||||||||| ||||||| |
|
|
| T |
221993 |
atcaaatataacaacattaaactttgaatccccttcatatttgaaacgcaagaaggaaccataccctatagaatagtattctgcaaactgttgccatttg |
222092 |
T |
|
| Q |
540 |
ttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaacattcttgagttcgctcccat |
639 |
Q |
| |
|
|||||||||||||| || | || | |||||||| ||||| || |||| | ||||| || ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
222093 |
ttgcaaaagtaaacgtcgttgccgcatttcttcagttccatttcccaatcacagccatcgggaacagtaattgtagcaacattcttgagttcattcccaa |
222192 |
T |
|
| Q |
640 |
atattgttataaagacttcaggaattctctgcagt |
674 |
Q |
| |
|
|| || ||||||| | || ||||||||||||||| |
|
|
| T |
222193 |
atctttttataaatccatctggaattctctgcagt |
222227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 340 - 674
Target Start/End: Original strand, 216948 - 217282
Alignment:
| Q |
340 |
tttcaaccctggaccttttcataggcctaggacacttggtatttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac |
439 |
Q |
| |
|
|||||||| ||||||||||| |||| ||| || |||| || |||||||||||| | |||||| ||||||| ||||||||||||||||||| ||||||| | |
|
|
| T |
216948 |
tttcaaccttggaccttttcctaggactatgaaactttgtttttgtttctccatttgtactttgagttttgaatggatagcaaatctcaatagaagttgc |
217047 |
T |
|
| Q |
440 |
atcaaatataataacattaaactttgaattcccttcatatttgaaagacatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttg |
539 |
Q |
| |
|
||||||||||| ||| |||||||||||| |||||||||||||||| ||| |||| |||| || | || ||||||||||||||||||||||| ||||||| |
|
|
| T |
217048 |
atcaaatataaagacactaaactttgaatccccttcatatttgaaacacaggaaggaaccataccctatagaatagtattctgcaaactgttgccatttg |
217147 |
T |
|
| Q |
540 |
ttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaacattcttgagttcgctcccat |
639 |
Q |
| |
|
|||||||||||||| || | || | |||||||| || || || |||| | |||||| || ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
217148 |
ttgcaaaagtaaacgtcattgccgcatttcttcagtttcatttcccaatcacaaccatcgggaacagtaattgtagcaacattcttgagttcattcccaa |
217247 |
T |
|
| Q |
640 |
atattgttataaagacttcaggaattctctgcagt |
674 |
Q |
| |
|
|| || ||||||| | || |||||||||| |||| |
|
|
| T |
217248 |
atctttttataaattcatctggaattctctacagt |
217282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 340 - 674
Target Start/End: Original strand, 197070 - 197404
Alignment:
| Q |
340 |
tttcaaccctggaccttttcataggcctaggacacttggtatttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac |
439 |
Q |
| |
|
|||||||| ||||||||||| |||| |||| ||| || || |||| ||||||| || ||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
197070 |
tttcaaccttggaccttttcgtaggactagcacattttgtgtttggttctccattaacacttggagtttttaatggataacaaatctcaacataagttac |
197169 |
T |
|
| Q |
440 |
atcaaatataataacattaaactttgaattcccttcatatttgaaagacatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttg |
539 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||| | | ||||||| || | ||| |||||||||| ||| |||| || ||||| | |
|
|
| T |
197170 |
gtcaaatataataacactaaactttgaattcccttcgtatttgaaagataggtagcaaccataccctaatgaatagtattttgcgaactcttcccattcg |
197269 |
T |
|
| Q |
540 |
ttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaacattcttgagttcgctcccat |
639 |
Q |
| |
|
||| ||||| ||| || | || |||||||||||| || ||||||| | ||||||| || || |||| ||||||||| |||| |||||| ||||| |
|
|
| T |
197270 |
ttggaaaagaaaatgtcattgccgcgtttcttcaatctcattttccaatcacgaccatcgggaactgtaactgtagcaactttctcgagttcattcccaa |
197369 |
T |
|
| Q |
640 |
atattgttataaagacttcaggaattctctgcagt |
674 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||| |
|
|
| T |
197370 |
acattgttataaagtcttcaggaattctctgcagt |
197404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 340 - 674
Target Start/End: Complemental strand, 205123 - 204789
Alignment:
| Q |
340 |
tttcaaccctggaccttttcataggcctaggacacttggtatttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac |
439 |
Q |
| |
|
|||||||||| || ||||| |||| ||||||| | ||||||||||||||| ||||||| |||||||| | |||||||||||||||||| |||||||| |
|
|
| T |
205123 |
tttcaacccttgaactttttctaggagtaggacattgtgtatttgtttctccattagtactcggagttttgagtggatagcaaatctcaaccgaagttac |
205024 |
T |
|
| Q |
440 |
atcaaatataataacattaaactttgaattcccttcatatttgaaagacatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttg |
539 |
Q |
| |
|
||||||||||| |||| ||||||||||||| ||||| ||||||||||| | | ||||||| ||| ||| |||||||||| |||||||| || ||||| | |
|
|
| T |
205023 |
atcaaatataacaacactaaactttgaatttccttcgtatttgaaagataggtagcaaccacatcctaacgaatagtattttgcaaactcttgccattcg |
204924 |
T |
|
| Q |
540 |
ttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaacattcttgagttcgctcccat |
639 |
Q |
| |
|
||| ||||| ||| || | || ||||||||||| || | ||||| | ||||||| | |||||| ||||||||||||||||||||| ||||| |
|
|
| T |
204923 |
ttgtaaaagaaaatgtcattgccgtgtttcttcaatctcattctccaatcacgaccatcagtagcagtaactgtagcaacattcttgagttctatcccaa |
204824 |
T |
|
| Q |
640 |
atattgttataaagacttcaggaattctctgcagt |
674 |
Q |
| |
|
|| |||||||||| | || | ||||||||||||| |
|
|
| T |
204823 |
atcttgttataaactcatctgaaattctctgcagt |
204789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 387 - 485
Target Start/End: Original strand, 198274 - 198372
Alignment:
| Q |
387 |
tctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaactttgaattcccttcatatttgaaa |
485 |
Q |
| |
|
|||||| |||||||||||||||| |||| ||| ||||||||||||||||| |||| |||||| ||||||||||||||||||||||| ||| |||||| |
|
|
| T |
198274 |
tctccattagtacttggagttttgaatgaataagaaatctcaacagaagttgtatcatatataacaacattaaactttgaattcccttgatagttgaaa |
198372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 381 - 674
Target Start/End: Original strand, 226110 - 226403
Alignment:
| Q |
381 |
tttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaactttgaattcccttcatatt |
480 |
Q |
| |
|
|||| ||||||| |||| || |||||| |||||||| ||||||||||||||||| ||| |||||| |||||| |||||||||||||||||||||| |
|
|
| T |
226110 |
tttggttctccattagtcctccgagtttggaatggataagaaatctcaacagaagttctatcgtatataacaacattgaactttgaattcccttcatatt |
226209 |
T |
|
| Q |
481 |
tgaaagacatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttgttgcaaaagtaaacatcctccccacgtttcttcaattccaa |
580 |
Q |
| |
|
||||| | | ||||| || | | ||||||||||||||||||||| ||| |||||||||||| ||| | | |||| |||||| | ||||| |
|
|
| T |
226210 |
tgaaatctaaataacaaccataataaatacaatagtattctgcaaactgttgccaattgttgcaaaagaaaatttggccgccacatttctttagttccat |
226309 |
T |
|
| Q |
581 |
tttccaagtaagaccatccggtacagtaattgtagcaacattcttgagttcgctcccatatattgttataaagacttcaggaattctctgcagt |
674 |
Q |
| |
|
||||| | ||||||| || |||||||| ||||||||||| | |||||| ||||| || |||||||||| | || ||||||||||||||| |
|
|
| T |
226310 |
attccactcacgaccatcgggaacagtaatggtagcaacattgtcgagttcattcccaaatcttgttataaactcatctggaattctctgcagt |
226403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 381 - 485
Target Start/End: Original strand, 211667 - 211771
Alignment:
| Q |
381 |
tttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaactttgaattcccttcatatt |
480 |
Q |
| |
|
|||| ||||||| |||| || |||||| |||||||| ||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| |||| |
|
|
| T |
211667 |
tttgcttctccattagtcctccgagtttggaatggataagaaatctcaacagaagttgtatcgtatataacaacattgaactttgaattcccttcgtatt |
211766 |
T |
|
| Q |
481 |
tgaaa |
485 |
Q |
| |
|
||||| |
|
|
| T |
211767 |
tgaaa |
211771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 387 - 553
Target Start/End: Complemental strand, 203682 - 203516
Alignment:
| Q |
387 |
tctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaactttgaattcccttcatatttgaaag |
486 |
Q |
| |
|
|||||| ||||||||| |||||| |||||||| ||||||||||| ||||| |||| |||||| ||| || |||||||| |||||||| |||||| |
|
|
| T |
203682 |
tctccattagtacttgaagttttgaatggataagaaatctcaacaaaagttggatcatatataacaactacgaaatttgaatttccttcatacttgaaat |
203583 |
T |
|
| Q |
487 |
acatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttgttgcaaaagtaaac |
553 |
Q |
| |
|
| | |||||||| || | ||||||||||||||||| |||| ||| |||||||||||| |||| |
|
|
| T |
203582 |
ctaaataacaaccgtaactgatggaatagtattctgcaaagtgttgccaattgttgcaaaagaaaac |
203516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 216723 - 216774
Alignment:
| Q |
153 |
aacatttcgtttcagatgctttgatgcaaaatcagcattaatatactgcaca |
204 |
Q |
| |
|
||||||| | |||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
216723 |
aacatttggattcagatgctttgaagcaaaatcagcattaacatactgcaca |
216774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 6e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 340 - 672
Target Start/End: Original strand, 29838223 - 29838555
Alignment:
| Q |
340 |
tttcaaccctggaccttttcataggcctaggacacttggtatttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac |
439 |
Q |
| |
|
|||||||| |||||||||| ||| |||||| | || || |||| ||||||| ||||||||||||||| || |||||| |||| |||||||||||| | |
|
|
| T |
29838223 |
tttcaaccttggacctttttctagaactaggataatttgtttttggttctccattagtacttggagtttcgaaaggataggaaatttcaacagaagttgc |
29838322 |
T |
|
| Q |
440 |
atcaaatataataacattaaactttgaattcccttcatatttgaaagacatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttg |
539 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||| || |||||| |||||| |||||| || ||||||| |
|
|
| T |
29838323 |
atcaaatataataacactaaactttgaattcccttcatatttgaaagaaatgaagcaaccatatcctatagaataatattctacaaactcttgccatttg |
29838422 |
T |
|
| Q |
540 |
ttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaacattcttgagttcgctcccat |
639 |
Q |
| |
|
||||||||| |||||| ||| ||||||||||||| ||||| |||||| | ||||||| || |||||||||||||||||||| |||||||| | ||| |
|
|
| T |
29838423 |
ttgcaaaagaaaacattctcgccacgtttcttcagttccattttccatacacgaccatctggaacagtaattgtagcaacattattgagttcatttccaa |
29838522 |
T |
|
| Q |
640 |
atattgttataaagacttcaggaattctctgca |
672 |
Q |
| |
|
|| |||||||||| | || ||||||||||||| |
|
|
| T |
29838523 |
atcttgttataaattcatctggaattctctgca |
29838555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 1e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 340 - 674
Target Start/End: Original strand, 6903370 - 6903704
Alignment:
| Q |
340 |
tttcaaccctggaccttttcataggcctaggacacttggtatttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac |
439 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||| | ||||||||||||||| ||||||| |||||||| | |||||||||||||||||| |||||||| |
|
|
| T |
6903370 |
tttcaaccctggaactttttctaggagtaggacattgtgtatttgtttctccattagtactcggagttttgagtggatagcaaatctcaaccgaagttac |
6903469 |
T |
|
| Q |
440 |
atcaaatataataacattaaactttgaattcccttcatatttgaaagacatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttg |
539 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||| ||||||||||| | | ||||||| |||| ||| |||||||||| |||||||| || ||||| | |
|
|
| T |
6903470 |
atcaaatataataacactaaactttgaatttccttcgtatttgaaagataggtagcaaccatatcctaatgaatagtattttgcaaactcttgccattcg |
6903569 |
T |
|
| Q |
540 |
ttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaacattcttgagttcgctcccat |
639 |
Q |
| |
|
||| ||||| ||| | | || ||||||||||| || | ||||| | ||||||| || |||||| ||||||||||||||||||||| ||||| |
|
|
| T |
6903570 |
ttgtaaaagaaaatgtaattgccgtgtttcttcaatctcattctccaatcacgaccatcaggagcagtaactgtagcaacattcttgagttctatcccaa |
6903669 |
T |
|
| Q |
640 |
atattgttataaagacttcaggaattctctgcagt |
674 |
Q |
| |
|
|| |||||||||| | || | ||||||||||||| |
|
|
| T |
6903670 |
atcttgttataaactcatctgaaattctctgcagt |
6903704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 387 - 553
Target Start/End: Original strand, 6904803 - 6904969
Alignment:
| Q |
387 |
tctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaactttgaattcccttcatatttgaaag |
486 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| ||||||||||| ||||| |||| |||||| ||| || ||||||||| ||||||| |||||| |
|
|
| T |
6904803 |
tctccattagtacttggagttttgaatggataagaaatctcaacaaaagttggatcatatataacaactacgaaatttgaattctcttcatacttgaaat |
6904902 |
T |
|
| Q |
487 |
acatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttgttgcaaaagtaaac |
553 |
Q |
| |
|
| | |||| ||| || | ||||||||||||||||| |||| ||| |||||||||||| |||| |
|
|
| T |
6904903 |
ctaaataacaactgtaactgatggaatagtattctgcaaagtgttgccaattgttgcaaaagaaaac |
6904969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 366 - 553
Target Start/End: Original strand, 3808344 - 3808532
Alignment:
| Q |
366 |
ctaggacacttggtatttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaacttt- |
464 |
Q |
| |
|
|||||| |||| || |||| ||||| | |||||||||||||||| || |||||||||||| ||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
3808344 |
ctaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttg |
3808443 |
T |
|
| Q |
465 |
gaattcccttcatatttgaaagacatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttgttgcaaaagtaaac |
553 |
Q |
| |
|
||||| |||||||| |||||||| | | | ||||| |||| || || ||||||||| |||| || |||||||||||||||| |||| |
|
|
| T |
3808444 |
gaatttccttcataattgaaagaaaggtaccaaccatatcctattgagtagtattctatgaactcttgccatttgttgcaaaagaaaac |
3808532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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