View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18607_low_6 (Length: 579)
Name: NF18607_low_6
Description: NF18607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18607_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 13 - 469
Target Start/End: Complemental strand, 38121353 - 38120897
Alignment:
| Q |
13 |
tcaacaacatgactattttcgccgtggatgatctttctatattctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcatta |
112 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38121353 |
tcaacaacatgactattttcgctgttgatgatctttctatattctccggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcatta |
38121254 |
T |
|
| Q |
113 |
cttgtctatcgctgatcttgaaaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtg |
212 |
Q |
| |
|
|||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38121253 |
cttgtcaatcgccgatcttgagaagcttccggttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtg |
38121154 |
T |
|
| Q |
213 |
gcatcagcgccaatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgc |
312 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
38121153 |
acatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagattgttgtgcacagcgtgtatttgccttttccgc |
38121054 |
T |
|
| Q |
313 |
atatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcattggaaggagcgggtgtcggagccagagctgctactgtatcagattc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38121053 |
atatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctactgtatcagattc |
38120954 |
T |
|
| Q |
413 |
tgctggtcaggcgacggaagaatcctgctctgctcttgatggacgtggtgtttgtgc |
469 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||| |||||||||||||| |||||| |
|
|
| T |
38120953 |
tgctggtcaggccacggaagaaacctgctctgctcctgatggacgtggtggttgtgc |
38120897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 469
Target Start/End: Original strand, 38608770 - 38609226
Alignment:
| Q |
13 |
tcaacaacatgactattttcgccgtggatgatctttctatattctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcatta |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38608770 |
tcaacaacatgactattttcgccgttgatgatctttctatattctccggttctcaatcgtacatcagcaatgtgcgattccatatcataccgaattatta |
38608869 |
T |
|
| Q |
113 |
cttgtctatcgctgatcttgaaaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtg |
212 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38608870 |
cttgtcgatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtg |
38608969 |
T |
|
| Q |
213 |
gcatcagcgccaatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgc |
312 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608970 |
acatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgc |
38609069 |
T |
|
| Q |
313 |
atatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcattggaaggagcgggtgtcggagccagagctgctactgtatcagattc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| ||||| |||||| |||| | ||| ||| |||||| |
|
|
| T |
38609070 |
atatcaatcctattgcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagcaggtgttggagccggagcatcaactttattagattc |
38609169 |
T |
|
| Q |
413 |
tgctggtcaggcgacggaagaatcctgctctgctcttgatggacgtggtgtttgtgc |
469 |
Q |
| |
|
| | |||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
38609170 |
tccaggtcaggcgacggaagaaacctgctctgctcttgatggacgtggtggttgtgc |
38609226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 469
Target Start/End: Original strand, 38793553 - 38794009
Alignment:
| Q |
13 |
tcaacaacatgactattttcgccgtggatgatctttctatattctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcatta |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38793553 |
tcaacaacatgactattttcgccgttgatgatctttctatattctccggttctcaatcgtacatcagcaatgtgcgattccatatcataccgaattatta |
38793652 |
T |
|
| Q |
113 |
cttgtctatcgctgatcttgaaaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtg |
212 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38793653 |
cttgtcgatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtg |
38793752 |
T |
|
| Q |
213 |
gcatcagcgccaatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgc |
312 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793753 |
acatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgc |
38793852 |
T |
|
| Q |
313 |
atatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcattggaaggagcgggtgtcggagccagagctgctactgtatcagattc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| ||||| |||||| |||| | ||| ||| |||||| |
|
|
| T |
38793853 |
atatcaatcctattgcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagcaggtgttggagccggagcatcaactttattagattc |
38793952 |
T |
|
| Q |
413 |
tgctggtcaggcgacggaagaatcctgctctgctcttgatggacgtggtgtttgtgc |
469 |
Q |
| |
|
| | |||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
38793953 |
tccaggtcaggcgacggaagaaacctgctctgctcttgatggacgtggtggttgtgc |
38794009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 459 - 570
Target Start/End: Complemental strand, 38613722 - 38613611
Alignment:
| Q |
459 |
ggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagtttaaaattactcataattttgaaacctgggaccagag |
558 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38613722 |
ggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagtttaaaattactcataattttgaaagctgggaccagag |
38613623 |
T |
|
| Q |
559 |
atgatgatgatg |
570 |
Q |
| |
|
| |||||||||| |
|
|
| T |
38613622 |
aagatgatgatg |
38613611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 462
Target Start/End: Complemental strand, 28730927 - 28730478
Alignment:
| Q |
13 |
tcaacaacatgactattttcgccgtggatgatctttctatattctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcatta |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28730927 |
tcaacaacatgactattttcgccgttgatgatctttctatattctccggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcgtta |
28730828 |
T |
|
| Q |
113 |
cttgtctatcgctgatcttgaaaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtg |
212 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28730827 |
cttgtcaatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtg |
28730728 |
T |
|
| Q |
213 |
gcatcagcgccaatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgc |
312 |
Q |
| |
|
||| ||| || ||||||||||||||||| || || |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28730727 |
acattagcaccgatgaggattaactatgttagggtgaaggttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgc |
28730628 |
T |
|
| Q |
313 |
atatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcattggaaggagcgggtgtcggagccagagctgctactgtatcagattc |
412 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28730627 |
atatcaatcctattgcggatgcttatgatactatcttaggaggtgaaggagcatcggaaggagcaggtgtcggagccagagctgctactgtatcagattc |
28730528 |
T |
|
| Q |
413 |
tgctggtcaggcgacggaagaatcctgctctgctcttgatggacgtggtg |
462 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||| ||||||| |
|
|
| T |
28730527 |
tgctggtcaggcgactgaagaaacctgctctgctcttgatgggcgtggtg |
28730478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 323
Target Start/End: Complemental strand, 18224426 - 18224363
Alignment:
| Q |
260 |
cgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatcct |
323 |
Q |
| |
|
|||||||||||| || ||||| || |||||||||||||| ||||| ||||| ||||| |||||| |
|
|
| T |
18224426 |
cgtcatccgcaacgtcaagatcgtcgtgcacagtgtgtacttgccatttccacatattaatcct |
18224363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University