View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18607_low_7 (Length: 514)

Name: NF18607_low_7
Description: NF18607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18607_low_7
NF18607_low_7
[»] chr2 (11 HSPs)
chr2 (19-504)||(45229009-45229494)
chr2 (19-84)||(41241220-41241285)
chr2 (27-86)||(15305572-15305631)
chr2 (27-84)||(12464569-12464626)
chr2 (27-84)||(41407218-41407275)
chr2 (19-78)||(41812178-41812237)
chr2 (42-84)||(11863848-11863890)
chr2 (46-84)||(42659266-42659304)
chr2 (27-76)||(2227091-2227140)
chr2 (18-83)||(22971605-22971669)
chr2 (27-84)||(42868557-42868614)
[»] chr3 (14 HSPs)
chr3 (27-84)||(37689150-37689207)
chr3 (28-80)||(20880398-20880450)
chr3 (27-84)||(35959552-35959609)
chr3 (27-82)||(583965-584020)
chr3 (27-80)||(3845658-3845711)
chr3 (27-106)||(18405928-18406004)
chr3 (27-84)||(24684919-24684976)
chr3 (27-72)||(30956722-30956767)
chr3 (27-72)||(30972534-30972579)
chr3 (27-84)||(46778323-46778380)
chr3 (29-83)||(19983698-19983752)
chr3 (27-80)||(51929456-51929510)
chr3 (19-56)||(44061111-44061148)
chr3 (40-84)||(53789570-53789614)
[»] chr7 (8 HSPs)
chr7 (27-84)||(4970884-4970941)
chr7 (39-106)||(30571039-30571109)
chr7 (19-84)||(21568716-21568781)
chr7 (27-84)||(23989580-23989637)
chr7 (28-84)||(46078064-46078120)
chr7 (27-77)||(39279887-39279936)
chr7 (51-84)||(3308372-3308405)
chr7 (27-80)||(48140137-48140190)
[»] chr8 (9 HSPs)
chr8 (27-78)||(29168148-29168199)
chr8 (18-83)||(1058161-1058226)
chr8 (27-84)||(12976130-12976187)
chr8 (27-83)||(32975978-32976034)
chr8 (26-73)||(42043440-42043487)
chr8 (27-73)||(25930650-25930696)
chr8 (27-84)||(10758352-10758409)
chr8 (36-73)||(11861735-11861772)
chr8 (40-84)||(38750275-38750319)
[»] chr5 (13 HSPs)
chr5 (18-84)||(3735578-3735644)
chr5 (27-82)||(16458074-16458129)
chr5 (27-73)||(10639881-10639927)
chr5 (29-84)||(25461744-25461799)
chr5 (25-73)||(3932779-3932828)
chr5 (36-104)||(15015750-15015816)
chr5 (27-84)||(24030498-24030555)
chr5 (42-83)||(26005349-26005390)
chr5 (27-84)||(31038216-31038273)
chr5 (27-84)||(31047440-31047497)
chr5 (27-84)||(31051815-31051872)
chr5 (46-83)||(34667827-34667864)
chr5 (27-104)||(35445954-35446029)
[»] chr6 (6 HSPs)
chr6 (40-84)||(6909982-6910026)
chr6 (28-84)||(24626212-24626268)
chr6 (19-56)||(10645414-10645451)
chr6 (27-84)||(30536395-30536452)
chr6 (30-78)||(30536657-30536705)
chr6 (26-73)||(9763392-9763439)
[»] chr4 (5 HSPs)
chr4 (27-104)||(22030105-22030177)
chr4 (27-84)||(19494831-19494888)
chr4 (27-84)||(43505873-43505930)
chr4 (62-106)||(7601664-7601708)
chr4 (27-76)||(31076482-31076531)
[»] chr1 (9 HSPs)
chr1 (40-84)||(2295021-2295065)
chr1 (36-84)||(27976512-27976560)
chr1 (41-84)||(5741579-5741622)
chr1 (28-73)||(37473327-37473372)
chr1 (29-74)||(49938659-49938704)
chr1 (41-84)||(5720898-5720941)
chr1 (27-84)||(17830071-17830128)
chr1 (29-65)||(38189695-38189731)
chr1 (30-74)||(41195293-41195337)
[»] scaffold0528 (1 HSPs)
scaffold0528 (27-84)||(1063-1120)


Alignment Details
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 19 - 504
Target Start/End: Complemental strand, 45229494 - 45229009
Alignment:
Q  19 ttaacctcattttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatgtactataagctgcaaataagctattcatacatat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45229494 ttaacctcattttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatgtactataagctgcaaataagctattcatacatat 45229395  T
Q  119 tcacaaataattacttaaaatttgaatgcagactcataattcttttccaaacaagagagtagagacaagtattcacatacctcaatggtgatgaaatcaa 218  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45229394 tcacatataattacttaaaatttgaatgcagactcataattcttttccaaacaagagagtagagacaagtattcacatacctcaatggtgatgaaatcaa 45229295  T
Q  219 acaagggaaatgccttgaggatgagagcgatgccgagacgttttggatcggaaaagagtaagagcgaaggaagcgataacaacaccgacgatatcagcaa 318  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45229294 acaagggaaatgccttgaggatgagagcgatgcccagacgttttggatcggaaaagagtaagagcgaaggaagcgataacaacaccgacgatatcagcaa 45229195  T
Q  319 tggcgtctttgaaggaagcaccggaagagcggaaatagccaaggtgatcggcggcttctttggcggcgccggcgaggagagaaacgacggatccaatgga 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45229194 tggcgtctttgaaggaagcaccggaagagcggaaatagccaaggtgatcggcggcttctttggcggcgccggcgaggagagaaacgacggatccaatgga 45229095  T
Q  419 aatggcgtggcggcggaggaaaggatgtgaagtaaaggaagcgagagcgtagaagagaagagtgagagtgaaacacatgatgatgt 504  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45229094 aatggcgtggcggcggaggaaaggatgtgaagtgaaggaagcgagagcgtagaagagaagagtgagagtgaaacacatgatgatgt 45229009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 41241220 - 41241285
Alignment:
Q  19 ttaacctcattttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    ||||| |||||||||| ||| ||||||||||||||||||||| ||||| ||||||| | |||||||    
T  41241220 ttaacttcattttatcttttcctatagaaatagcttatgtaagcttatccataagcgcatatcatg 41241285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 15305631 - 15305572
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatgta 86  Q
    |||||||| ||||||||| |||||||||||| || |||||||| ||||||||| ||||||    
T  15305631 attttatcatttgctataaaaatagcttatgcaagcttatacacaagcacttaccatgta 15305572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 12464569 - 12464626
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||| ||| ||| ||||||||||||||||| ||| |||||| ||||||||||||    
T  12464569 attttatctttttctacagaaatagcttatgtaagcttctacatatgcacttatcatg 12464626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 41407275 - 41407218
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||| |||| || ||||||||||||||||| ||||||||||||  |||||||||    
T  41407275 attttatcttttggtacagaaatagcttatgtaagcttatacataagtgcttatcatg 41407218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 41812178 - 41812237
Alignment:
Q  19 ttaacctcattttatcgtttgctatagaaatagcttatgtaaacttatacataagcactt 78  Q
    ||||| |||||||| | ||||| ||| ||||||||||||||| ||||||||||| |||||    
T  41812178 ttaacttcattttaccatttgccataaaaatagcttatgtaagcttatacataatcactt 41812237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 11863890 - 11863848
Alignment:
Q  42 atagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||    
T  11863890 atagaaatagcttatgtaagcttatgcataagcgcttatcatg 11863848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 42659266 - 42659304
Alignment:
Q  46 aaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  42659266 aaatagcttatgtaagcttatacataagcgcttatcatg 42659304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 2227140 - 2227091
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcac 76  Q
    |||||||| ||| | ||||||||||||||||||| || ||||||||||||    
T  2227140 attttatcttttaccatagaaatagcttatgtaagctcatacataagcac 2227091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 22971605 - 22971669
Alignment:
Q  18 attaacctcattttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcat 83  Q
    |||||| | |||||||| ||| ||||||||||||||||| ||| |||||||| |||| ||||||||    
T  22971605 attaactttattttatctttt-ctatagaaatagcttatataagcttatacacaagcgcttatcat 22971669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 42868557 - 42868614
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||| ||| ||||  ||||||||||||||||||||| ||||||| | |||||||    
T  42868557 attttatctttttctatgaaaatagcttatgtaaacttatgcataagcgcctatcatg 42868614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 37689207 - 37689150
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  37689207 attttatcttttgctatagaaatagcttatgtgaacttatacgtaagcacttatcatg 37689150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 20880450 - 20880398
Alignment:
Q  28 ttttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttat 80  Q
    ||||||| ||||||||| ||||||||||||||| |||||||||||||||||||    
T  20880450 ttttatcatttgctataaaaatagcttatgtaagcttatacataagcacttat 20880398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 35959552 - 35959609
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||| ||| ||||||||||||||||||| | ||||||||||||| |||||||||    
T  35959552 attttatccttttctatagaaatagcttatgtgagcttatacataagctcttatcatg 35959609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 584020 - 583965
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatca 82  Q
    |||||||| ||| ||||||||||| ||||||||| ||||||| |||||||||||||    
T  584020 attttatcattttctatagaaataacttatgtaagcttatacgtaagcacttatca 583965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 3845658 - 3845711
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttat 80  Q
    |||||||| ||  ||||||||||||||||||||| |||||||| ||||||||||    
T  3845658 attttatctttctctatagaaatagcttatgtaagcttatacaaaagcacttat 3845711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 18405928 - 18406004
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatgtactataagctgcaaataagct 106  Q
    |||||||| ||| ||||| ||||| ||||||||| ||||||||||||| ||| |||   |||||||| ||||||||||||    
T  18405928 attttatcttttcctatataaataacttatgtaagcttatacataagcgcttctca---actataagttgcaaataagct 18406004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 24684919 - 24684976
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||| ||| ||||| ||||||||||||||||||||| || |||| |||||||||    
T  24684919 attttatctttttctataaaaatagcttatgtaaacttatgcaaaagcgcttatcatg 24684976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 30956722 - 30956767
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataa 72  Q
    |||||||| ||||||||||||||||||||||||| ||||| |||||    
T  30956722 attttatcttttgctatagaaatagcttatgtaagcttatgcataa 30956767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 30972534 - 30972579
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataa 72  Q
    |||||||| ||||||||||||||||||||||||| ||||| |||||    
T  30972534 attttatcttttgctatagaaatagcttatgtaagcttatgcataa 30972579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 46778323 - 46778380
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    ||||||||  |||||||||||||||||||| ||| || |||||||||| |||||||||    
T  46778323 attttatctcttgctatagaaatagcttatataagctgatacataagcgcttatcatg 46778380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 19983752 - 19983698
Alignment:
Q  29 tttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcat 83  Q
    |||||| ||| ||||||||||| ||||||||| ||||||||||| | ||||||||    
T  19983752 tttatctttttctatagaaataacttatgtaagcttatacataaacgcttatcat 19983698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 51929456 - 51929510
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaa-cttatacataagcacttat 80  Q
    |||||||| ||||||||| ||||| |||||| ||| |||||||||||||||||||    
T  51929456 attttatcttttgctataaaaatatcttatgcaaagcttatacataagcacttat 51929510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 44061111 - 44061148
Alignment:
Q  19 ttaacctcattttatcgtttgctatagaaatagcttat 56  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  44061111 ttaaccttattttatcttttgctatagaaatagcttat 44061148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 53789570 - 53789614
Alignment:
Q  40 ctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    ||||||||||||||||||||| |||| |||||||  |||||||||    
T  53789570 ctatagaaatagcttatgtaagcttacacataagtgcttatcatg 53789614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 4970884 - 4970941
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  4970884 attttatcttttgctatagaaatagcttatgtaagcttatacataaccgcttatcatg 4970941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 30571039 - 30571109
Alignment:
Q  39 gctatagaaatagcttatgtaaacttatacataagcacttatcatg---tactataagctgcaaataagct 106  Q
    |||||| || |||||||||||| |||||||||| ||||||||||||   | ||||||||||||||||||||    
T  30571039 gctatataagtagcttatgtaagcttatacatatgcacttatcatgctatgctataagctgcaaataagct 30571109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 21568716 - 21568781
Alignment:
Q  19 ttaacctcattttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    ||||| ||||| |||| ||||||||| |||||||||||| || ||||||||||||  |||||||||    
T  21568716 ttaacatcattctatcttttgctataaaaatagcttatgcaagcttatacataagtgcttatcatg 21568781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 23989580 - 23989637
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||| ||| ||||| |||||| ||||| ||||||||||||||| ||||||||||    
T  23989580 attttatcttttactataaaaatagtttatgcaaacttatacataagaacttatcatg 23989637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 46078120 - 46078064
Alignment:
Q  28 ttttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    ||||||| ||| ||||| ||||| ||||||||| ||||||||||||| |||||||||    
T  46078120 ttttatctttttctataaaaataacttatgtaagcttatacataagcgcttatcatg 46078064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 39279936 - 39279887
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcact 77  Q
    |||||||| ||||| |||||||||||| |||||| ||||||||||||||||    
T  39279936 attttatcttttgcaatagaaatagct-atgtaagcttatacataagcact 39279887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 3308372 - 3308405
Alignment:
Q  51 gcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||||| |||||||||||||||||||||||    
T  3308372 gcttatgtaaccttatacataagcacttatcatg 3308405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 48140190 - 48140137
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttat 80  Q
    |||||||| |||| |||| |||||||||||| || ||||||||||||| |||||    
T  48140190 attttatcttttgttataaaaatagcttatgcaagcttatacataagcgcttat 48140137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 29168148 - 29168199
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcactt 78  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||||||||    
T  29168148 attttatcttttgctatagaaatagcttatgtgagcttatacataagcactt 29168199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 1058161 - 1058226
Alignment:
Q  18 attaacctcattttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcat 83  Q
    |||||| | |||||||  ||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  1058161 attaactttattttatgatttgctataaaaatagcttatgtaagcttatacataagcgcttatcat 1058226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 12976187 - 12976130
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||  ||||||||||||||||||||||| | ||||||||||||| |||||||||    
T  12976187 attttatattttgctatagaaatagcttatgtgagcttatacataagcgcttatcatg 12976130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 32976034 - 32975978
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcat 83  Q
    |||||||| ||||||||| |||||||||||| || |||||| |||||||||||||||    
T  32976034 attttatcttttgctataaaaatagcttatgcaagcttatatataagcacttatcat 32975978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 42043440 - 42043487
Alignment:
Q  26 cattttatcgtttgctatagaaatagcttatgtaaacttatacataag 73  Q
    ||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  42043440 cattttatcttttgctatagaaatagcatatgtaagcttatacataag 42043487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 25930650 - 25930696
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataag 73  Q
    |||| ||| ||| ||||||||||||||||||||| ||||||||||||    
T  25930650 atttcatcctttcctatagaaatagcttatgtaagcttatacataag 25930696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 10758352 - 10758409
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||  |||||||||||||||| ||| || | ||||||||||| |||||||||||    
T  10758352 attttatgatttgctatagaaatagtttacgtgagcttatacataatcacttatcatg 10758409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 11861772 - 11861735
Alignment:
Q  36 tttgctatagaaatagcttatgtaaacttatacataag 73  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  11861772 tttgctatagaaatagcttatgtgagcttatacataag 11861735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 38750319 - 38750275
Alignment:
Q  40 ctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    ||||| |||||||||||| || ||||||||||||| |||||||||    
T  38750319 ctataaaaatagcttatgcaagcttatacataagcgcttatcatg 38750275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 3735578 - 3735644
Alignment:
Q  18 attaacctcattttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||| | |||| ||| ||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  3735578 attaactttatttcatcttttgctatagaaatagcttatgtaagcttatccataagcgcttatcatg 3735644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 16458074 - 16458129
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatca 82  Q
    |||||||| ||||||||| |||||||||||| || |||||| ||||||||||||||    
T  16458074 attttatcttttgctataaaaatagcttatgcaagcttatatataagcacttatca 16458129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 10639927 - 10639881
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataag 73  Q
    |||||||| ||||||||||||||||||||| || |||||||||||||    
T  10639927 attttatcttttgctatagaaatagcttatatagacttatacataag 10639881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 25461744 - 25461799
Alignment:
Q  29 tttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||| ||||||||| |||||||||||| || |||||| |||| |||||||||||    
T  25461744 tttatcttttgctataaaaatagcttatgcaagcttatatataaccacttatcatg 25461799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 3932779 - 3932828
Alignment:
Q  25 tcattttatcgtttgctatagaaatagcttatgtaa-acttatacataag 73  Q
    |||||||||| ||||||||| |||||||||||||||  ||||||||||||    
T  3932779 tcattttatcttttgctataaaaatagcttatgtaattcttatacataag 3932828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 15015816 - 15015750
Alignment:
Q  36 tttgctatagaaatagcttatgtaaacttatacataagcacttatcatgtactataagctgcaaataag 104  Q
    ||||||| | |||||||||||| || ||||||||||||||||| |  ||||  ||||||||||||||||    
T  15015816 tttgctacaaaaatagcttatgcaagcttatacataagcacttgtgctgta--ataagctgcaaataag 15015750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 24030498 - 24030555
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    ||||||||| ||||||||| |||||||||||| | ||||||||   ||||||||||||    
T  24030498 attttatcggttgctatagcaatagcttatgtgagcttatacacgcgcacttatcatg 24030555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 26005349 - 26005390
Alignment:
Q  42 atagaaatagcttatgtaaacttatacataagcacttatcat 83  Q
    |||||||||||||||| || |||||||||||||| |||||||    
T  26005349 atagaaatagcttatgcaagcttatacataagcaattatcat 26005390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 31038273 - 31038216
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||| ||||| ||||||| || |||||||| |||||| |||| |||||||||||    
T  31038273 attttatcttttgccatagaaacagattatgtaagcttatagataatcacttatcatg 31038216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 31047497 - 31047440
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||| ||||| ||||||| || |||||||| |||||| |||| |||||||||||    
T  31047497 attttatcttttgccatagaaacagattatgtaagcttatagataatcacttatcatg 31047440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 31051872 - 31051815
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||| ||||| ||||||| ||||||||||| |||||| |||| || ||||||||    
T  31051872 attttatcttttgccatagaaacagcttatgtaagcttatagataatcatttatcatg 31051815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 34667827 - 34667864
Alignment:
Q  46 aaatagcttatgtaaacttatacataagcacttatcat 83  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  34667827 aaatagcttatgtaatcttatacataaacacttatcat 34667864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 35446029 - 35445954
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaac-ttatacataagcacttatcatgtactataagctgcaaataag 104  Q
    |||||||| ||||||||| ||||||||||||||| | |||||||| ||| |||   ||||  |||||||||||||||||    
T  35446029 attttatcatttgctataaaaatagcttatgtaagctttatacattagcgctt---atgtgttataagctgcaaataag 35445954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 6909982 - 6910026
Alignment:
Q  40 ctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||||||||||||||||  ||||||||||||||||||||||    
T  6909982 ctatagaaatagcttatgtaagtttatacataagcacttatcatg 6910026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 24626268 - 24626212
Alignment:
Q  28 ttttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    ||||||| ||| ||||||||||||||||||||| |||||||||||||| | ||||||    
T  24626268 ttttatcctttcctatagaaatagcttatgtaagcttatacataagcaatcatcatg 24626212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 10645414 - 10645451
Alignment:
Q  19 ttaacctcattttatcgtttgctatagaaatagcttat 56  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  10645414 ttaacttcattttatcgtttgctatagaaatagcttat 10645451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 30536452 - 30536395
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||| |||||||||  ||||||||||| ||||||||||||||||  ||||||||    
T  30536452 attttatcatttgctataataatagcttatgcaaacttatacataagcttttatcatg 30536395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 30536657 - 30536705
Alignment:
Q  30 ttatcgtttgctatagaaatagcttatgtaaacttatacataagcactt 78  Q
    ||||| ||||||||| |||||||||||| || |||||||||||||||||    
T  30536657 ttatcttttgctataaaaatagcttatgcaagcttatacataagcactt 30536705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 9763439 - 9763392
Alignment:
Q  26 cattttatcgtttgctatagaaatagcttatgtaaacttatacataag 73  Q
    ||||||||| |||| |||| ||||| ||||||||||||||||||||||    
T  9763439 cattttatcttttgttataaaaatatcttatgtaaacttatacataag 9763392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 22030177 - 22030105
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatgtactataagctgcaaataag 104  Q
    |||||||| ||| ||||||||||||||||||| | ||||||||||||| |||||||||    ||||||||||||||||    
T  22030177 attttatccttt-ctatagaaatagcttatgtgagcttatacataagcgcttatcatg----ataagctgcaaataag 22030105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 19494888 - 19494831
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||| |||||||||||| |||||||||||| |||||||||| |  |||||||||    
T  19494888 attttatcatttgctatagaactagcttatgtaaccttatacataggtgcttatcatg 19494831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 43505930 - 43505873
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||| ||||||||| |||||||||||| || ||||||||||||  |||||||||    
T  43505930 attttatcttttgctataaaaatagcttatgcaagcttatacataagtgcttatcatg 43505873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 7601708 - 7601664
Alignment:
Q  62 cttatacataagcacttatcatgtactataagctgcaaataagct 106  Q
    ||||||||||||| |||||| ||| ||||||||||||||||||||    
T  7601708 cttatacataagcgcttatcttgttctataagctgcaaataagct 7601664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 31076482 - 31076531
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcac 76  Q
    |||||||| |||||| || |||||||||||| || |||||||||||||||    
T  31076482 attttatcttttgctctaaaaatagcttatgcaagcttatacataagcac 31076531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 2295065 - 2295021
Alignment:
Q  40 ctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||    
T  2295065 ctatagaaatagcttatgtaagcttatgcataagcacttatcatg 2295021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 27976560 - 27976512
Alignment:
Q  36 tttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||    
T  27976560 tttgctataaaaatagcttatgtaagcttatacataaggacttatcatg 27976512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 5741622 - 5741579
Alignment:
Q  41 tatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||| ||||||||||||||||||||||||||||| |||||||||    
T  5741622 tataaaaatagcttatgtaaacttatacataagcgcttatcatg 5741579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 37473372 - 37473327
Alignment:
Q  28 ttttatcgtttgctatagaaatagcttatgtaaacttatacataag 73  Q
    ||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  37473372 ttttatcatttgctataaaaatagcttatgtaagcttatacataag 37473327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 49938704 - 49938659
Alignment:
Q  29 tttatcgtttgctatagaaatagcttatgtaaacttatacataagc 74  Q
    |||||| ||||||||||||||||||||||| | |||||||||||||    
T  49938704 tttatcctttgctatagaaatagcttatgtgagcttatacataagc 49938659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 5720941 - 5720898
Alignment:
Q  41 tatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||| |||||||||| |||||||||||||||||| |||||||||    
T  5720941 tataaaaatagcttacgtaaacttatacataagcgcttatcatg 5720898  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 17830128 - 17830071
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||| ||||||||| ||||||||||||||| | |||| |||||  |||||||||    
T  17830128 attttatcatttgctataaaaatagcttatgtaatcgtatagataagtgcttatcatg 17830071  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 38189731 - 38189695
Alignment:
Q  29 tttatcgtttgctatagaaatagcttatgtaaactta 65  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  38189731 tttatcttttgctatagaaatagcttatgtaagctta 38189695  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 41195293 - 41195337
Alignment:
Q  30 ttatcgtttgctatagaaatagcttatgtaaacttatacataagc 74  Q
    ||||| ||| ||||| |||||| ||||||||||||||||||||||    
T  41195293 ttatcatttactataaaaatagtttatgtaaacttatacataagc 41195337  T

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Target: scaffold0528 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 1063 - 1120
Alignment:
Q  27 attttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 84  Q
    |||||||| ||||| ||||||| || |||||||| |||||| |||| |||||||||||    
T  1063 attttatcttttgccatagaaacagattatgtaagcttatagataatcacttatcatg 1120  T

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