View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18607_low_9 (Length: 442)

Name: NF18607_low_9
Description: NF18607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18607_low_9
NF18607_low_9
[»] chr6 (13 HSPs)
chr6 (1-421)||(23251725-23252145)
chr6 (1-424)||(23247310-23247736)
chr6 (4-421)||(23266262-23266676)
chr6 (2-424)||(23257699-23258124)
chr6 (71-416)||(23283444-23283789)
chr6 (71-420)||(23289757-23290106)
chr6 (103-424)||(23586945-23587266)
chr6 (205-424)||(23583164-23583382)
chr6 (88-424)||(23391243-23391579)
chr6 (89-424)||(23633965-23634300)
chr6 (203-417)||(23506899-23507113)
chr6 (256-391)||(23594164-23594299)
chr6 (1-58)||(23289669-23289729)
[»] chr5 (1 HSPs)
chr5 (253-308)||(3996385-3996440)


Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 23251725 - 23252145
Alignment:
Q  1 cacaactctggcatattcaacatttcctcttcttcgacttcaacacgaaacatattcagctcctgtgttgcgacaacagctacaacggtgtcaatgtcac 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23251725 cacaactctggcatattcaacacttcctcttcttcgacttcaacacgaaacatattcagctcctgtgttgcgacaacagctacaacggtgtcaatgtcac 23251824  T
Q  101 cggtcattaaagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttatcgcggaagttgctggaataggaaggcgcca 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23251825 tggtcattaaagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttatcgcggaagttgctggaataggaaggcgcca 23251924  T
Q  201 caccgagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23251925 caccgagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcct 23252024  T
Q  301 agccaaatcctattctttgtgttcggctccctcatttcacaaacccatttatttaagttcctcttcctcacacctctatagaccgggtggcgagtttcct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  23252025 agccaaatcctattctttgtgttcggctccctcatttcacaaacccatttatttaagttcctcttcctcacacctctatagacagggtgacgagtttcct 23252124  T
Q  401 taaatatcttcctccctgctc 421  Q
    |||||||||||||||| ||||    
T  23252125 taaatatcttcctccccgctc 23252145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 23247310 - 23247736
Alignment:
Q  1 cacaactctggcatattcaacatttcctc---ttcttcgacttcaacacgaaacatattcagctcctgtgttgcgacaacagctacaacggtgtcaatgt 97  Q
    |||||||||||||||||||||||||||||   ||| || ||||| |||| ||||||||||||||||| ||| ||||| ||| |||| |  |||||||| |    
T  23247310 cacaactctggcatattcaacatttcctcctgttcatcaacttccacacaaaacatattcagctcctttgtggcgacgacatctacgatagtgtcaatat 23247409  T
Q  98 caccggtcattaaagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttatcgcggaagttgctggaataggaaggcg 197  Q
         ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23247410 tgttagtcattaaagtattgtctggtctaaaagcttcggccgcttttgtagctgccttttgaatatcttttattgcggaagttgctggaataggaaggcg 23247509  T
Q  198 ccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgggctgccatctcggctgttggaaaagtt 297  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||||||| | |||||||||||||    
T  23247510 ccacaccgagtctgagaaattgagacaggcatagcggcccctcaatgccattgcagcaacatcgtgggctcgggcagccatctccggtgttggaaaagtt 23247609  T
Q  298 cctagccaaatcctattctttgtgttcggctccctcatttcacaaacccatttatttaagttcctcttcctcacacctctatagaccgggtggcgagttt 397  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23247610 cccagccaaatcctattctttgtgttcggctccctcatttcacaaacccatttatttaagttcctcttcctcacacctctatagaccgggtggcgagttt 23247709  T
Q  398 ccttaaatatcttcctccctgctcgct 424  Q
    |||||||||||||||||||||||||||    
T  23247710 ccttaaatatcttcctccctgctcgct 23247736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 4 - 421
Target Start/End: Original strand, 23266262 - 23266676
Alignment:
Q  4 aactctggcatattcaacatttcctcttcttcgacttcaacacgaaacatattcagctcctgtgttgcgacaacagctacaacggtgtcaatgtcaccgg 103  Q
    ||||| ||||||||||||||||||||||||||   ||| |||| ||||||||||| ||||| ||| ||||||||||||||||| || |||||||          
T  23266262 aactccggcatattcaacatttcctcttcttc---ttccacacaaaacatattcaactcctttgtggcgacaacagctacaacagtctcaatgttggtaa 23266358  T
Q  104 tcattaaagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttatcgcggaagttgctggaataggaaggcgccacac 203  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||    
T  23266359 tcattatagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttattgaggaagttgctggaataggaagccgccacac 23266458  T
Q  204 cgagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctagc 303  Q
    ||| |||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23266459 cgaatctgcaaaattgagacaggcgtagcgacccctcaatgccatcgcagcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctagc 23266558  T
Q  304 caaatcctattctttgtgttcggctccctcatttcacaaacccatttatttaagttcctcttcctcacacctctatagaccgggtggcgagtttccttaa 403  Q
    ||||| ||| |||| ||||| || ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||| |    
T  23266559 caaattctagtcttcgtgttgggttccctcatttcacaaacccatttatctaagttcctcttccttacacctctatacaccgggtggcgagtttccttga 23266658  T
Q  404 atatcttcctccctgctc 421  Q
    ||||||||||||||||||    
T  23266659 atatcttcctccctgctc 23266676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 2 - 424
Target Start/End: Original strand, 23257699 - 23258124
Alignment:
Q  2 acaactctggcatattcaacatttcct---cttcttcgacttcaacacgaaacatattcagctcctgtgttgcgacaacagctacaacggtgtcaatgtc 98  Q
    |||| ||||||||||||||||||||||   ||||||||||||| |||| ||||||||||| ||||| ||| || || |||| ||| ||||||||||| ||    
T  23257699 acaattctggcatattcaacatttcctgctcttcttcgacttccacacaaaacatattcaactcctttgtggccacgacaggtactacggtgtcaatatc 23257798  T
Q  99 accggtcattaaagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttatcgcggaagttgctggaataggaaggcgc 198  Q
    |    |||||||||| ||||||||||||||||||||||| ||||  | ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23257799 attaatcattaaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttgctggaataggaaggcgc 23257898  T
Q  199 cacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgggctgccatctcggctgttggaaaagttc 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||||||| |    
T  23257899 cacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgccattgcggcaacatcgtgggctcgggctgccatttcgggtgttggaaaagtcc 23257998  T
Q  299 ctagccaaatcctattctttgtgttcggctccctcatttcacaaacccatttatttaagttcctcttcctcacacctctatagaccgggtggcgagtttc 398  Q
    | |||||||||||  |||||||||| || |||||||||||||| |||||||||| ||||||||||||||||||||||||||| | |||||||||||||||    
T  23257999 ccagccaaatcctggtctttgtgttgggttccctcatttcacacacccatttatctaagttcctcttcctcacacctctatacatcgggtggcgagtttc 23258098  T
Q  399 cttaaatatcttcctccctgctcgct 424  Q
    ||| || |||||||||||||||||||    
T  23258099 cttgaagatcttcctccctgctcgct 23258124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 71 - 416
Target Start/End: Original strand, 23283444 - 23283789
Alignment:
Q  71 cgacaacagctacaacggtgtcaatgtcaccggtcattaaagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttat 170  Q
    |||| ||||| |||||||||||||||||    ||||||||||| ||||||||||| ||||| |||||||||| || ||||||| ||||||| ||||||      
T  23283444 cgacgacagccacaacggtgtcaatgtcgttagtcattaaagtcttgtctggtctgaaagcctcggcggcttctgcagctgccctttgaatgtcttttgc 23283543  T
Q  171 cgcggaagttgctggaataggaaggcgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgg 270  Q
      | |  |  || ||||||||||| | |||||||||||||||||| ||||||||||||||||||||||| ||||| || || ||||| ||||| |||||     
T  23283544 ttcagcggaggcaggaataggaagcctccacaccgagtctgcaaagttgagacaggcatagcggccccttaatgccatggctgcaacgtcgtgtgctcgt 23283643  T
Q  271 gctgccatctcggctgttggaaaagttcctagccaaatcctattctttgtgttcggctccctcatttcacaaacccatttatttaagttcctcttcctca 370  Q
    || |||||||| || ||||||||||| ||||||||||||||| ||||| |||| || ||||||||||||||||||||||||| |||||||||||||||||    
T  23283644 gcagccatctcagccgttggaaaagtccctagccaaatcctagtctttttgttgggttccctcatttcacaaacccatttatctaagttcctcttcctca 23283743  T
Q  371 cacctctatagaccgggtggcgagtttccttaaatatcttcctccc 416  Q
    |||| ||||| |||||||||||||| ||||||||  ||||||||||    
T  23283744 cacccctatacaccgggtggcgagtctccttaaacttcttcctccc 23283789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 71 - 420
Target Start/End: Original strand, 23289757 - 23290106
Alignment:
Q  71 cgacaacagctacaacggtgtcaatgtcaccggtcattaaagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttat 170  Q
    |||||||||| ||||| ||||||||| ||   ||||||||||| ||||||||||| ||||| || ||||||| |  ||||||| ||||||| ||||||      
T  23289757 cgacaacagccacaaccgtgtcaatgccagtagtcattaaagtcttgtctggtctgaaagcctcagcggcttctccagctgccctttgaatgtcttttgc 23289856  T
Q  171 cgcggaagttgctggaataggaaggcgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgg 270  Q
      | |  |  || |||||||||||   |||| ||||||||||||| ||||||||||| ||||||||||||||||| || || ||||| ||||| || |||    
T  23289857 ttcagcggaggcaggaataggaagcttccacgccgagtctgcaaagttgagacaggcgtagcggcccctcaatgcaattgctgcaacgtcgtgtgcacgg 23289956  T
Q  271 gctgccatctcggctgttggaaaagttcctagccaaatcctattctttgtgttcggctccctcatttcacaaacccatttatttaagttcctcttcctca 370  Q
    || |||||||||||||||| |||||| ||||||||||||||| ||||  | || || |||||||||||||| |||||||||| |||||||||||||||||    
T  23289957 gcagccatctcggctgttgcaaaagtccctagccaaatcctagtcttcttatttggttccctcatttcacacacccatttatctaagttcctcttcctca 23290056  T
Q  371 cacctctatagaccgggtggcgagtttccttaaatatcttcctccctgct 420  Q
    |||||||||| |||||||||||||| ||||||||  ||||||||||||||    
T  23290057 cacctctatacaccgggtggcgagtctccttaaacttcttcctccctgct 23290106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 103 - 424
Target Start/End: Original strand, 23586945 - 23587266
Alignment:
Q  103 gtcattaaagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttatcgcggaagttgctggaataggaaggcgccaca 202  Q
    |||| |||||| ||||||||||| ||||| |||||||| | |||||| |||||||| ||||| |||      | |||||| ||  | || || ||||||     
T  23586945 gtcaataaagtcttgtctggtctgaaagcctcggcggcctctgtagcagccttttgtatatcctttgcttgagtagttgcaggtttggggagccgccacg 23587044  T
Q  203 ccgagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctag 302  Q
    | ||||||||||| |||||||| || ||||||||||||||||| || || |||||||||||||| ||||||||||||||||| ||||||||||| |||||    
T  23587045 ctgagtctgcaaagttgagacaagcgtagcggcccctcaatgccattgcagcaacatcgtgggcacgggctgccatctcggcagttggaaaagtccctag 23587144  T
Q  303 ccaaatcctattctttgtgttcggctccctcatttcacaaacccatttatttaagttcctcttcctcacacctctatagaccgggtggcgagtttcctta 402  Q
    ||||||| || ||||  |||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||     
T  23587145 ccaaatcttagtcttcttgttaggctccctcatttcacaaacccatttatctaagttcctcttcctcactcctctatagactgggtggcgagtttccttg 23587244  T
Q  403 aatatcttcctccctgctcgct 424  Q
    ||  ||||||||||||| ||||    
T  23587245 aacttcttcctccctgcacgct 23587266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 205 - 424
Target Start/End: Original strand, 23583164 - 23583382
Alignment:
Q  205 gagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctagcc 304  Q
    ||||||||||| ||||||||||| ||||||||| ||||||| || || |||||||||||||| |||| ||||||||| || ||||||||||| |||||||    
T  23583164 gagtctgcaaagttgagacaggcgtagcggccc-tcaatgccattgcagcaacatcgtgggcacgggttgccatctccgcagttggaaaagtccctagcc 23583262  T
Q  305 aaatcctattctttgtgttcggctccctcatttcacaaacccatttatttaagttcctcttcctcacacctctatagaccgggtggcgagtttccttaaa 404  Q
    ||||| || ||||  |||| |||| ||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||| ||    
T  23583263 aaatcttagtcttcttgttaggcttcctcatttcacaaacccatttatctaagttcctcttccttacacccctatagaccgggtggcgagtctccttgaa 23583362  T
Q  405 tatcttcctccctgctcgct 424  Q
      ||||||||||||| ||||    
T  23583363 cttcttcctccctgcacgct 23583382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 88 - 424
Target Start/End: Original strand, 23391243 - 23391579
Alignment:
Q  88 gtgtcaatgtcaccggtcattaaagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttatcgcggaagttgctggaa 187  Q
    ||||||||||||   || ||| |||| ||||||||||| ||||| || ||||| | || ||| |||||||| |||||||||  |   |  || || || |    
T  23391243 gtgtcaatgtcattagtaattgaagtcttgtctggtctgaaagcctcagcggcctgtgcagccgccttttgtatatcttttgcctgagtggtggcaggta 23391342  T
Q  188 taggaaggcgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgggctgccatctcggctgt 287  Q
    |||| || |||||| | ||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||| || ||||||||||||||||| || ||    
T  23391343 tagggagccgccacgcggagtctgcaaagttgagacaggcgtagcggcccctcaatgccattgcggcaacatcatgtgctcgggctgccatctccgcagt 23391442  T
Q  288 tggaaaagttcctagccaaatcctattctttgtgttcggctccctcatttcacaaacccatttatttaagttcctcttcctcacacctctatagaccggg 387  Q
    ||||||||| |||||||||||  || ||||  | || || |||||||||||||| |||||||||| |||||| || ||||||||||| ||||| ||||||    
T  23391443 tggaaaagtgcctagccaaattttagtcttcttatttggttccctcatttcacacacccatttatctaagtttcttttcctcacacccctatataccggg 23391542  T
Q  388 tggcgagtttccttaaatatcttcctccctgctcgct 424  Q
    |||||||| ||||| ||  ||||||||||||| ||||    
T  23391543 tggcgagtctccttgaacttcttcctccctgcacgct 23391579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 89 - 424
Target Start/End: Original strand, 23633965 - 23634300
Alignment:
Q  89 tgtcaatgtcaccggtcattaaagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttatcgcggaagttgctggaat 188  Q
    ||||| ||||| | ||| ||||||| ||||||||||| ||||| ||||| |||| || ||| | |||||| |||||| || || | | ||| || |||||    
T  23633965 tgtcattgtcatcagtcgttaaagtcttgtctggtctgaaagcctcggcagcttctgcagccgtcttttgtatatctcttgtctctgtagtggcaggaat 23634064  T
Q  189 aggaaggcgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgggctgccatctcggctgtt 288  Q
    |||||| ||| |  | ||||| |||||||| |||||||| | ||| || || ||||| |  || || ||||| || ||||| |||||||||||||| |||    
T  23634065 aggaagccgcgaggcagagtcagcaaaattaagacaggcgttgcgacctcttaatgccaatgccgcgacatcatgtgctcgtgctgccatctcggccgtt 23634164  T
Q  289 ggaaaagttcctagccaaatcctattctttgtgttcggctccctcatttcacaaacccatttatttaagttcctcttcctcacacctctatagaccgggt 388  Q
    |||||||| |||||||||||| || ||||  |||| ||||||||||||||||| |||||||||| |||||||||| |||||||||| || || |||||||    
T  23634165 ggaaaagtccctagccaaatcttagtcttcttgttaggctccctcatttcacacacccatttatctaagttcctcctcctcacacccctgtacaccgggt 23634264  T
Q  389 ggcgagtttccttaaatatcttcctccctgctcgct 424  Q
    |||| || ||||| ||  ||||||||||||| ||||    
T  23634265 ggcgtgtctccttgaacttcttcctccctgcacgct 23634300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 203 - 417
Target Start/End: Original strand, 23506899 - 23507113
Alignment:
Q  203 ccgagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctag 302  Q
    ||||||||||||| ||||||||||| | ||  ||  |||| || |  || |||||||| ||||| || ||||||||||||||||||||||||||||||||    
T  23506899 ccgagtctgcaaagttgagacaggcgtcgccacctttcaacgccagtgccgcaacatcatgggcccgagctgccatctcggctgttggaaaagttcctag 23506998  T
Q  303 ccaaatcctattctttgtgttcggctccctcatttcacaaacccatttatttaagttcctcttcctcacacctctatagaccgggtggcgagtttcctta 402  Q
    ||||||| |  ||||| |||| ||||  || |||||||| |||||||||| || ||||||  |||||||||| ||||| ||||||||||||||||||||     
T  23506999 ccaaatcttggtctttttgttaggctgtcttatttcacacacccatttatctaggttcctactcctcacacccctatacaccgggtggcgagtttccttg 23507098  T
Q  403 aatatcttcctccct 417  Q
    ||| |||||||||||    
T  23507099 aatttcttcctccct 23507113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 391
Target Start/End: Original strand, 23594164 - 23594299
Alignment:
Q  256 acatcgtgggctcgggctgccatctcggctgttggaaaagttcctagccaaatcctattctttgtgttcggctccctcatttcacaaacccatttattta 355  Q
    ||||| |||||||| ||| ||||||| ||  ||||||||||||||||||| ||| || || |  |||| ||||||||||||||||| |||||||||  ||    
T  23594164 acatcatgggctcgtgcttccatctcagccattggaaaagttcctagccatatcttagtcatcttgttaggctccctcatttcacacacccatttaccta 23594263  T
Q  356 agttcctcttcctcacacctctatagaccgggtggc 391  Q
    | |||||  |||||||||| ||||||| ||||||||    
T  23594264 aattcctactcctcacacccctatagatcgggtggc 23594299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 23289669 - 23289729
Alignment:
Q  1 cacaactctggcatattcaacatttcctcttc---ttcgacttcaacacgaaacatattca 58  Q
    ||||||||| |||||||||||| |||||||||   ||||||||| |||| |||||||||||    
T  23289669 cacaactcttgcatattcaacacttcctcttctttttcgacttccacacaaaacatattca 23289729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 308
Target Start/End: Original strand, 3996385 - 3996440
Alignment:
Q  253 gcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctagccaaat 308  Q
    ||||| || |||||||| ||||||||||||| ||||||| |||| |||||||||||    
T  3996385 gcaacgtcatgggctcgagctgccatctcgggtgttggataagtgcctagccaaat 3996440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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