View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18608_high_2 (Length: 487)
Name: NF18608_high_2
Description: NF18608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18608_high_2 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 11 - 487
Target Start/End: Original strand, 28269287 - 28269759
Alignment:
| Q |
11 |
tgagatgaatcaaacataataactataaataatttgtttcttaattctgcagaagaaaatgtgattgcatatacaaacactttgattttacctccaattt |
110 |
Q |
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| T |
28269287 |
tgagatgaatcaaacataataactataaataatttgtttcttaattctgcagaagaaaatgtgattgcatataca----ctttgattttacctccaattt |
28269382 |
T |
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| Q |
111 |
cttcactaactcttttgatgtaggtgctgatacaattatgtggcgcgcatttggactgataaatccctcttccacagctttgtcgatgaatgaaagtaac |
210 |
Q |
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| T |
28269383 |
cttcaccaactcttttgatgtaggtgctgatacaattatgtggcgcgcatttggactgataaatccctcttccacagctttgtcgatgaatgaaagtaac |
28269482 |
T |
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| Q |
211 |
gaattaaagtatccatcaacatttactaatcccacctgcgagttgtggaatgtcaaatctagttaaactagtaacagcacaacgtgaattacttaataat |
310 |
Q |
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| T |
28269483 |
gaattaaagtatccatcaacatttactaatcccacctgcgagttgtggaatgtcaaatctagttaaactagtaatagcacaacgtgaattacttaataat |
28269582 |
T |
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| Q |
311 |
atttaggttccttaacaaaatagtacaagtcaattaccggtttgtcgtgaatcccaagttgagcccaggttatgacttcaagaagctcctctagagtccc |
410 |
Q |
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| T |
28269583 |
atttaggttccttaacaaaatagtacaagtcaattaccggtttgtcgtgaatcccaagttgagcccaggttatgacttcaagaagctcctctagagtccc |
28269682 |
T |
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| Q |
411 |
ataaccacctgcatgcaatttgcataagttttacgagaatttaatgcaaaaaacataggagaacagaaacatttaag |
487 |
Q |
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| T |
28269683 |
ataaccacctgcatgcaatttgcataagttttacgagaatttaatgcaaaaaacataggagagcagaaacatttaag |
28269759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 98 - 247
Target Start/End: Complemental strand, 79404 - 79255
Alignment:
| Q |
98 |
ttacctccaatttcttcactaactcttttgatgtaggtgctgatacaattatgtggcgcgcatttggactgataaatccctcttccacagctttgtcgat |
197 |
Q |
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| T |
79404 |
ttacctccaatttcttgaccaactcttttgcagttggtgctgatacaattatgtgacgagcatttggactaataaacccttcttccacagctttgtcaat |
79305 |
T |
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| Q |
198 |
gaatgaaagtaacgaattaaagtatccatcaacatttactaatcccacct |
247 |
Q |
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| T |
79304 |
gaatgacaacaaggagttaaagtatccatcaacatttactaatccaacct |
79255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 424
Target Start/End: Complemental strand, 79159 - 79078
Alignment:
| Q |
343 |
attaccggtttgtcgtgaatcccaagttgagcccaggttatgacttcaagaagctcctctagagtcccataaccacctgcat |
424 |
Q |
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| T |
79159 |
attaccggcttgtcatgaattccaagttgagcccatgttatgacttcaagaagttcctccagagttccatatccccctgcat |
79078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 40886880 - 40887029
Alignment:
| Q |
98 |
ttacctccaatttcttcactaactcttttgatgtaggtgctgatacaattatgtggcgcgcatttggactgataaatccctcttccacagctttgtcgat |
197 |
Q |
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| T |
40886880 |
ttacctccaatttcttgaccaactcttttgcagttggtgctgatacaattatgtgacgagcatttggactaataaacccttcttccacagctttgtcaat |
40886979 |
T |
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| Q |
198 |
gaatgaaagtaacgaattaaagtatccatcaacatttactaatcccacct |
247 |
Q |
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| T |
40886980 |
gaatgacaacaaggagttaaagtatccatcaacatttactaatccaacct |
40887029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 424
Target Start/End: Original strand, 40887125 - 40887206
Alignment:
| Q |
343 |
attaccggtttgtcgtgaatcccaagttgagcccaggttatgacttcaagaagctcctctagagtcccataaccacctgcat |
424 |
Q |
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| T |
40887125 |
attaccggcttgtcatgaattccaagttgagcccatgttatgacttcaagaagttcctccagagttccatatccccctgcat |
40887206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 344 - 427
Target Start/End: Original strand, 40461699 - 40461782
Alignment:
| Q |
344 |
ttaccggtttgtcgtgaatcccaagttgagcccaggttatgacttcaagaagctcctctagagtcccataaccacctgcatgca |
427 |
Q |
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| T |
40461699 |
ttaccggtttatcatggatgccaagttgagcccatgttatcacctcaaggagctcctcaagtgtcccatacccaccttcatgca |
40461782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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