View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18608_high_5 (Length: 388)

Name: NF18608_high_5
Description: NF18608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18608_high_5
NF18608_high_5
[»] chr1 (2 HSPs)
chr1 (1-388)||(42979975-42980362)
chr1 (2-88)||(42973840-42973926)


Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 42980362 - 42979975
Alignment:
Q  1 aattattggactgattccccattgtctatgcttcctatatatcatgaacttatcaatgctggtctccggatatgggtattcaggtaccgaccttaaccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42980362 aattattggactgattccccattgtctatgcttcctatatatcatgaacttatcaatgctggtctccggatatgggtattcaggtaccgaccttaaccaa 42980263  T
Q  101 gatacatatatctcaacacttatgaaaataattcaacagttgacatctcaatacatccatggacagtatgtgatatcaacttttggttgattgacatgtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42980262 gatacatatatctcaacacttatgaaaataattcaacagttgacatctcaatacatccatggacagtatgtgatatcaacttttggttgattgacatgtc 42980163  T
Q  201 ttacattatcctctaatgtatattccctactttgatagagtcaaatctcatcatttttgttgtgtttatttcttaattcttgaacagtatatctttattt 300  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42980162 ttacattatcctctaatgtatattgcctactttgatagagtcaaatctcatcacttttgttgtgtttatttcttaattcttgaacagtatatctttattt 42980063  T
Q  301 caacttttcaagcactgtgccaaaataaagtaaaaaatatctttgttccttaatcatttgagtatcacttatcacgttttaacaatcc 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42980062 caacttttcaagcactgtgccaaaataaagtaaaaaatatctttgttccttaatcatttgagtatcacttatcacgttttaacaatcc 42979975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 42973926 - 42973840
Alignment:
Q  2 attattggactgattccccattgtctatgcttcctatatatcatgaacttatcaatgctggtctccggatatgggtattcaggtacc 88  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||||    
T  42973926 attactggactgattccccattgtctatgcttcctatatatcaagaacttattaatgctgatctccggatatgggtatacaggtacc 42973840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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