View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18608_high_7 (Length: 284)
Name: NF18608_high_7
Description: NF18608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18608_high_7 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 17644989 - 17644706
Alignment:
| Q |
1 |
tattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgtt |
100 |
Q |
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| T |
17644989 |
tattggatgattttgaacatttgtattgttcaaggcttgtgattgaggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgtt |
17644890 |
T |
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| Q |
101 |
gagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaagaagaggaccataaataggatgcacatgat |
200 |
Q |
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| T |
17644889 |
gagtcttgaaagtttctcatggaagtagatactggaaacccagaaagattactttgtgaattgttaacaaggagaggaccagaaataggatgcacatgat |
17644790 |
T |
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| Q |
201 |
gtcttggtactggaggcgaaaactgaaccggaaccggttgccttgatgcatttgattcatttcctgtaatgttcttaattaaac |
284 |
Q |
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| T |
17644789 |
gtcttggtactggaggcgaaaactgaaccggaactggttgccttgatgcatttgattcatttcctgtaatgttcttaattaaac |
17644706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 17631491 - 17631290
Alignment:
| Q |
1 |
tattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgtt |
100 |
Q |
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|||||||| || |||||||||| ||||||| ||| ||||| ||||| |||||||| ||| ||||| ||||||| ||||||||||||||| |||||| | |
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| T |
17631491 |
tattggattatattgaacatttatattgttgaagacttgtgattgattagggtaagattgaaactgattacctcctgaattaccaatgtttagcggcaat |
17631392 |
T |
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| Q |
101 |
gagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaagaagaggaccataaataggatgcacatgat |
200 |
Q |
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| T |
17631391 |
aagtcttgagagtttctcatcgaagcagatattggaaactcaacaagattactccgtggattgtcaacaagaggattaccagtaataggctgcacaggat |
17631292 |
T |
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| Q |
201 |
gt |
202 |
Q |
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| T |
17631291 |
gt |
17631290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 17604908 - 17604737
Alignment:
| Q |
1 |
tattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgtt |
100 |
Q |
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||||||||||| ||||| |||| ||||||| ||| ||||| ||||| |||||||||| || ||||| ||||||| ||||||||||||||||||||| | |
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| T |
17604908 |
tattggatgatattgaaaatttatattgttgaagacttgtgattgatgagggtaaggctgaaactgattacctcctgaattaccaatgttcagcggaaat |
17604809 |
T |
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| Q |
101 |
gagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaaga |
172 |
Q |
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| T |
17604808 |
aggtcttgagagtttctcatcaaagaagatattggaaactcaacaatattactttgtgaattttcaacaaga |
17604737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 16481292 - 16481465
Alignment:
| Q |
1 |
tattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgtt |
100 |
Q |
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|||||| |||| |||||||||| | ||||| ||| ||||| ||||| |||| |||||||| ||||| ||||||| |||||||||||||||| || | |
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| T |
16481292 |
tattggctgatattgaacatttatgttgttgaagacttgtgattgatgaggataaggttgaaactgattacctcctgaattaccaatgttcgatgggagt |
16481391 |
T |
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| Q |
101 |
gagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaagaag |
174 |
Q |
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| T |
16481392 |
atgtcttgagagtttctcatcgaagaagatattggaaacttaacaagattactatgcgaattgtcaacaagaag |
16481465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 17645535 - 17645336
Alignment:
| Q |
1 |
tattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgtt |
100 |
Q |
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|||||| |||| |||||||||| ||||||| || ||| | ||||||||| | |||| ||||||||||||||||||||||| | ||||| | || |
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| T |
17645535 |
tattggctgatgttgaacatttatattgttgaatacttttggttgaggaggccatagttgaaactggttacctcttgaattacccaagttcaatg---tt |
17645439 |
T |
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| Q |
101 |
gagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaagaagaggaccataaataggatgcacatgat |
200 |
Q |
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| T |
17645438 |
ggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattctgtgaattgtaaacaagagaaggacgagtaataggttgcacatgat |
17645339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 29883431 - 29883364
Alignment:
| Q |
25 |
attgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttgaattaccaatgttca |
92 |
Q |
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| T |
29883431 |
attgttcaatacttgtgattgagtagggtaaggttgaaactggttacctcttgaactatcaaagttca |
29883364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 29880324 - 29880417
Alignment:
| Q |
25 |
attgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatg |
121 |
Q |
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| T |
29880324 |
attgttcaatacttgtgattgaggagggtaagactgaaattggttacctcttgaattatcaaagttca---tcgttgagttttgaaaatttctcatg |
29880417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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