View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18608_low_11 (Length: 296)
Name: NF18608_low_11
Description: NF18608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18608_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 281
Target Start/End: Complemental strand, 17800168 - 17799911
Alignment:
| Q |
12 |
atcatcaaagaaacgaaacttgtagccattatcaccggtttccatctgacgtagatctggatacgaactactactccttctcatccgtgtaacaccggtt |
111 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17800168 |
atcatcaaagaaacgaaacttgtaaccattatc---------catctgacgtagatctggatacgaactactactccttctcatccgtgtaacaccggtt |
17800078 |
T |
|
| Q |
112 |
atcaccggtgactgtaacaaccgattattcgaagtttcatcaaaaaccttactctcttcactagagaattcaaaccattgttgcgactcatatccacctc |
211 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17800077 |
atcaccggtgactgtaacaaccgatt---cgaagtttcatcaaaaaccttacgctcttcactagagaatccaaaccattgttgcgactcatatccacctc |
17799981 |
T |
|
| Q |
212 |
gttcagacgacgttgaaactattctgaacgtgtcgttttgatcgggaatgacgttgttggtggtggtttg |
281 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17799980 |
gttcagacgacgttgaaactattcggaacgtgtcgttttgatcgggaatgacgttgttgttggtggtttg |
17799911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University