View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18608_low_14 (Length: 245)
Name: NF18608_low_14
Description: NF18608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18608_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 55337782 - 55337985
Alignment:
| Q |
25 |
attataccaccgcacgtgtactaaccaacacagagaagaaaagaaaaaatacactcagattaatcgttcatgttcatccaccgtcgtcttcccaaaagca |
124 |
Q |
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| T |
55337782 |
attataccaccgcacgtgtattaaccaacacagagaagaaaaggaaaaatacactcagattaatcgttcatgttcatccaccgtcgtcttccccaaagca |
55337881 |
T |
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| Q |
125 |
tccacactcaaaagaagacatcaagctgctgccaggatcgtgtacttctgataccagttgatagaaccttgtaggattcgtacgaatactgaacaggact |
224 |
Q |
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| T |
55337882 |
tccacactcaaaagaagacatcaagctgctgccaggatcgtgtacttctgataccagttgatagaaccttgtaagattcgtactaatactgaacaggact |
55337981 |
T |
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| Q |
225 |
tatt |
228 |
Q |
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|||| |
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| T |
55337982 |
tatt |
55337985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 43600561 - 43600435
Alignment:
| Q |
102 |
ccaccgtcgtcttcccaaaagcatccacactcaaaagaagacatcaagctgctgccaggatcgtgtacttctgataccagttgatagaaccttgtaggat |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43600561 |
ccaccgtcgtcttcccaaaagcatccacactcaaaagaagacatcaagctgctgccaggatcgtgtacttctgataccagttgatagaaccttgtaggat |
43600462 |
T |
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| Q |
202 |
tcgtacgaatactgaacaggacttatt |
228 |
Q |
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| T |
43600461 |
tcgtacgaatactgaacaggacttatt |
43600435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 43606053 - 43605927
Alignment:
| Q |
102 |
ccaccgtcgtcttcccaaaagcatccacactcaaaagaagacatcaagctgctgccaggatcgtgtacttctgataccagttgatagaaccttgtaggat |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43606053 |
ccaccgtcgtcttcccaaaagcatccacactcaaaagaagacatcaagctgctgccaggatcgtgtacttctgataccagttgatagaaccttgtaggat |
43605954 |
T |
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| Q |
202 |
tcgtacgaatactgaacaggacttatt |
228 |
Q |
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||||||||||||||||||||||||||| |
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| T |
43605953 |
tcgtacgaatactgaacaggacttatt |
43605927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 43611545 - 43611419
Alignment:
| Q |
102 |
ccaccgtcgtcttcccaaaagcatccacactcaaaagaagacatcaagctgctgccaggatcgtgtacttctgataccagttgatagaaccttgtaggat |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43611545 |
ccaccgtcgtcttcccaaaagcatccacactcaaaagaagacatcaagctgctgccaggatcgtgtacttctgataccagttgatagaaccttgtaggat |
43611446 |
T |
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| Q |
202 |
tcgtacgaatactgaacaggacttatt |
228 |
Q |
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||||||||||||||||||||||||||| |
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| T |
43611445 |
tcgtacgaatactgaacaggacttatt |
43611419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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