View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18608_low_2 (Length: 508)
Name: NF18608_low_2
Description: NF18608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18608_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 36857346 - 36857835
Alignment:
| Q |
1 |
ctgaagatgtaaatttgagtggcatcatcaaaaccatgattagggcattttcttaacatagacttgtaatgttctcatacctcctagagggattctgttg |
100 |
Q |
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| T |
36857346 |
ctgaagatgtaaatttgagtggcatcatcaaaaccatgattagggcattttcttaacatagacttgtaatgttctcatacctcctagagggattctgttg |
36857445 |
T |
|
| Q |
101 |
tactttgggagaagacgactattgttggcatcttgtactttactttgaggataaaagcgattgatgaatttattctccagttcattccaatttgtcgtca |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36857446 |
tactttaggagaagacgactattgttggcatcttgtactttactttgaggataaaagcgattgatgaatttattctccagttcattccaatttgtcgtca |
36857545 |
T |
|
| Q |
201 |
ccgttgtagtttgatttaagtacaaatccttgacttttccactaaatgaatgtgggaatagccctgtgaat---atcggctcttcttcatactccataag |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
36857546 |
ccgttgtagtttgatttaagtacaaatccttgacttttccactaaatgaatgtgggaatagccttgtgaatatcatcggctcttcttcatactccataag |
36857645 |
T |
|
| Q |
298 |
tcataagcacctaatgatcttgctatttcataggattgccccaaatggactatgcttttctcacggtccattcatgcgaacgaattagcatacatgatat |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
36857646 |
tcataagcacctaatgatcttgctatttcataggattgctccaaatggactatggttttctaacggtccattcatgcgaacgaattagcgtacatgatat |
36857745 |
T |
|
| Q |
398 |
tcaaaagtccagccttcatttctatttatcttttattcggtcctaatctatgaacatgtccatgctgcctcggactattgatattcattt |
487 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36857746 |
tcaaaaatccagccttcatttctatttatcttttattcggtcctaatctatgaacatgtccatgctgcctcggactattgatattcattt |
36857835 |
T |
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