View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18608_low_4 (Length: 421)
Name: NF18608_low_4
Description: NF18608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18608_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 9 - 408
Target Start/End: Complemental strand, 8478538 - 8478139
Alignment:
| Q |
9 |
catcatcaaaaaccccagcaccgtcaacaacaaacggcgacaccactcctccaccgcgtaaagtcgcattaatcaccggaatcacaggccaagacggatc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8478538 |
catcatcaaaaaccccagcaccgtcaacaacaaacggcgacaccactcctccaccgcgtaaagtcgcattaatcaccggaatcacaggccaagacggatc |
8478439 |
T |
|
| Q |
109 |
atacctaacggaattcctcctcaacaaaggctactccgtccacggcctaattcgccgttcatcaaacttcaacacacaacgaatcgatcacatctatgtc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8478438 |
atacctaacggaattcctcctcaacaaaggctactccgtccacggcctaattcgccgttcttcaaacttcaacacacaacgaatcgatcacatctatgtc |
8478339 |
T |
|
| Q |
209 |
gatccacacaacgctcacaaagctcatatgaagcttcactacgccgatctctccgacgcttcctctctccgtcgctggctcgacactattctccccgacg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8478338 |
gatccacacaacgctcacaaagctcatatgaagcttcactacgccgatctctccgacgcttcctctctccgtcgctggctcgacactattctccccgacg |
8478239 |
T |
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| Q |
309 |
aagtttacaatctcgctgcacagtcacacgtcgcggtttcgtttgagattcctgattacactgctgatgttgttgctacaggtgctctccgtcttcttga |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8478238 |
aagtttacaatctcgctgcacagtcacacgtcgcggtttcgtttgagattcccgattacactgctgatgttgttgctacaggtgctctccgtcttcttga |
8478139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 408
Target Start/End: Complemental strand, 8486998 - 8486607
Alignment:
| Q |
17 |
aaaaccccagcaccgtcaacaacaaacggcgacaccactcctccaccgcgtaaagtcgcattaatcaccggaatcacaggccaagacggatcatacctaa |
116 |
Q |
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||||||||| |||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8486998 |
aaaaccccaacaccatcaacaacaaacggcgacaccactccaccaccgcggaaagtcgcattaatcaccggaatcacaggccaagacggatcatacctaa |
8486899 |
T |
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| Q |
117 |
cggaattcctcctcaacaaaggctactccgtccacggcctaattcgccgttcatcaaacttcaacacacaacgaatcgatcacatctatgtcgatccaca |
216 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8486898 |
cagaattcctcctcaacaaaggctactccgtccacggcctaattcgtcgttcgtcaaacttcaacacacaacgaattgatcacatctatgtcgatccaca |
8486799 |
T |
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| Q |
217 |
caacgctcacaaagctcatatgaagcttcactacgccgatctctccgacgcttcctctctccgtcgctggctcgacactattctccccgacgaagtttac |
316 |
Q |
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| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
8486798 |
cgacgctcacaaagctcatatgaagcttcactatgccgatctctccgacgcttccgctctccgtcgctggctcgacactatcctccctgacgaagtttac |
8486699 |
T |
|
| Q |
317 |
aatctcgctgcacagtcacacgtcgcggtttcgtttgagattcctgattacactgctgatgttgttgctacaggtgctctccgtcttcttga |
408 |
Q |
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|| ||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
8486698 |
aacctcgccgcacagtctcatgtcgcggtttcgtttgagattcctgattacactgcagatgttgttgctactggtgctctccgtcttcttga |
8486607 |
T |
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