View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18608_low_5 (Length: 407)
Name: NF18608_low_5
Description: NF18608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18608_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 28270113 - 28269736
Alignment:
| Q |
19 |
aatagtgcttcttttcaaagacttttgtttcctggcagtacttatcattctgagatgctgaaaattagtgactgttgcagaaggcaaggcacacaaagac |
118 |
Q |
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| T |
28270113 |
aatagtgcttcttttcaaagacttttgtttc-tggcagtacttatcattctgagatgctgaaaattagtgactgttgcagaaggcaaggcacacaaagac |
28270015 |
T |
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| Q |
119 |
aaaacttgtcattcactctttcttgggatcccttgcaagatagagggaagagagagggtgataagggatcttaatttggtgcagtatgtaatcaatctcg |
218 |
Q |
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| T |
28270014 |
aaaacttgtcattcactctttcttgggatcccttgcaagatagagggaagagagagggtgagaagggatcttaatttggtgcagtatgtaatcaatctcg |
28269915 |
T |
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| Q |
219 |
gccattgatttgaaatcggacgatttagattactcattcactatataaaaaatgatctgaccattggtttagattgaagggtcaagattggtaactgtgt |
318 |
Q |
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| T |
28269914 |
gccattgatttgaaatcggacgatttagattactcattcactatataaaaaatgatctgaccattggtttagattgaagggtcaagattagtaactgtgt |
28269815 |
T |
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| Q |
319 |
gccataattattgtagggaatctgtttcggatgcgaagccagtttattagatgaccttaaatgtttctgttctcctatg |
397 |
Q |
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| T |
28269814 |
gccataattattgtagggaatctgtttcggatgcgaagccagtttattagatgaccttaaatgtttctgctctcctatg |
28269736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 6041595 - 6041640
Alignment:
| Q |
206 |
gtaatcaatctcggccattgatttgaaatcggacgatttagattac |
251 |
Q |
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| T |
6041595 |
gtaatcaatctcggccattgatttaaaattgaacgaattagattac |
6041640 |
T |
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