View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18608_low_6 (Length: 389)
Name: NF18608_low_6
Description: NF18608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18608_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 58 - 389
Target Start/End: Original strand, 9783796 - 9784122
Alignment:
| Q |
58 |
atgcaatttagttcaagaattataacctagacttttggtggctaattgtatatgtataaactcataagcactttgtgcatcattcatagtggaaaacaat |
157 |
Q |
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| T |
9783796 |
atgcaatttagttcaagaattataacctagacttttggtggctaattgtat--gtataaactcataagcactttgtgcatcattcatagtggaaaacaat |
9783893 |
T |
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| Q |
158 |
aattctgatgccctacttagttgatatggacaatgcatgatatataatgtaaggtctgagattcaaacctcggccaccatcnnnnnnnnnnnnnntaatt |
257 |
Q |
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| T |
9783894 |
aattctgatgcccagcttagttgatatggacaatgcataatat---atgtaaggtctgaggttcaaacctcggccaccaccaaaaaataaaaaaataatt |
9783990 |
T |
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| Q |
258 |
ccgataaatttatttgtcgagtgtggattaaatccatagcgaggattattgggccgaacccctaaaatcataatgtcgtctctctcaactctcttttatt |
357 |
Q |
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| T |
9783991 |
ccgataaatttatttgtcgagtgtgaattaaatccatagcgaggatgattgggccgaacccctaaaatcagaatgtcgtctctctcaactctcttttatt |
9784090 |
T |
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| Q |
358 |
tttcttgcaaaattaaattgaattgtgatgat |
389 |
Q |
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| T |
9784091 |
tttcttgcaaaattaaattgaattgtgatgat |
9784122 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 10841913 - 10841960
Alignment:
| Q |
176 |
agttgatatggacaatgcatgatatataatgtaaggtctgagattcaaacc |
226 |
Q |
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| T |
10841913 |
agttgatatggacaatgcataatatata---taaggtttgagattcaaacc |
10841960 |
T |
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