View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18608_low_8 (Length: 352)
Name: NF18608_low_8
Description: NF18608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18608_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 29047358 - 29047023
Alignment:
| Q |
1 |
agaaggattatttgtaatgaataccctcaaaccaagttcacctttcgtgcgcgaaaaaatgcctttcttttcaagaggatagtgtaatacaacagcatca |
100 |
Q |
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| T |
29047358 |
agaaggattatttgtaatgaataccttcaaaccaagttcacctttcgtgcgcgaaaaaatgcctttcttttcaagaggatagtgtaatacaacagcatca |
29047259 |
T |
|
| Q |
101 |
gaatgtggaacaaatgaggttccagtgagcctaaccttaccaaggggaactttggagccattggttttgttatagtggtttatgcaggcttcaagattaa |
200 |
Q |
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| T |
29047258 |
gaatgtggaacaaatgaggttccagtgagcttaaccttgccaaggggaattttggagccattggttttgttatagtggtttatgcaggcttcaagattaa |
29047159 |
T |
|
| Q |
201 |
ggtttgataacttgcttggatctgtaatgttgaagtaaaaaatctcattccaatatggactaagatctttatctttagttgatgtacgaaatttctgatc |
300 |
Q |
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| T |
29047158 |
ggtttgataacttgcttggatctgtaatgttgaagtaaaaaatctcattccaatatggactaagatctttatctttagttgttgtacgaaatttctgatc |
29047059 |
T |
|
| Q |
301 |
atcaaattcaagttctacaaaagtagtagatgaccc |
336 |
Q |
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| T |
29047058 |
atcaaattcaagttctacaaaagtagtagatgaccc |
29047023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 11705162 - 11705242
Alignment:
| Q |
64 |
tttcttttcaagaggatagtgtaatacaacagcatcagaatgtggaacaaatgaggttccagtgagcctaaccttaccaag |
144 |
Q |
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| T |
11705162 |
tttcttttccagagggtagtgcaatacaacagcatcagaaagtggcacaaatgaggtttccgtgagacggaccttaccaag |
11705242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 323
Target Start/End: Original strand, 11705301 - 11705424
Alignment:
| Q |
200 |
aggtttgataacttgcttggatctgtaatgttgaagtaaaaaatctcattccaatatggactaagatctttatctttagttgatgtacgaaatttctgat |
299 |
Q |
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||| ||| ||| ||||||||||| | |||| |||||||||| |||| |||||| ||| | |||||||| ||||| || | ||| ||||| ||||||| |
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| T |
11705301 |
aggcttggtaatttgcttggatcagcaatggtgaagtaaaatttctcgttccaaacaggattcagatctttttctttcgtagttgtccgaaacttctgat |
11705400 |
T |
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| Q |
300 |
catcaaattcaagttctacaaaag |
323 |
Q |
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||||||| | |||||| ||||||| |
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| T |
11705401 |
catcaaaatgaagttccacaaaag |
11705424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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