View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18609_low_1 (Length: 612)

Name: NF18609_low_1
Description: NF18609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18609_low_1
NF18609_low_1
[»] chr1 (8 HSPs)
chr1 (405-597)||(50537606-50537797)
chr1 (1-169)||(50534957-50535135)
chr1 (218-332)||(50537403-50537517)
chr1 (167-227)||(50536132-50536192)
chr1 (203-277)||(46827888-46827962)
chr1 (189-275)||(46820901-46820987)
chr1 (187-251)||(7463443-7463507)
chr1 (158-251)||(11426852-11426945)
[»] chr2 (3 HSPs)
chr2 (214-318)||(45546394-45546498)
chr2 (217-276)||(45548051-45548110)
chr2 (37-75)||(36318997-36319035)
[»] chr3 (1 HSPs)
chr3 (159-251)||(21853458-21853550)
[»] chr8 (1 HSPs)
chr8 (157-225)||(26579274-26579342)
[»] chr7 (1 HSPs)
chr7 (193-250)||(48259775-48259832)
[»] chr4 (1 HSPs)
chr4 (188-252)||(23383339-23383403)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 8e-78; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 405 - 597
Target Start/End: Original strand, 50537606 - 50537797
Alignment:
Q  405 ggatgacaataatggtaaaatgtgtaataaggaagaaagaacttaaataggtattatggtaaagattgatgaaaaggggaaagttgatttgaagnnnnnn 504  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||          
T  50537606 ggatgacaacaatggtaaaatgtgtaataaggaagaaagaacttaaataggtattctggtcaagattgatgaaaaggggaaagttgatttgaagaaaaaa 50537705  T
Q  505 ntaaattcatgatttgatttctgttttaatcgttaatcgtaccagaaattgataaataggtattctattttaattgattttgtaaggaaattg 597  Q
     ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  50537706 ataaattcatgatttgatttctgttttaattgttaatcgtaccagaaattgataaataggtattctattttaattga-tttgtaaggaaattg 50537797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 50534957 - 50535135
Alignment:
Q  1 ataaaaagacaatgatgtgaattgaaaatcgacgggaagataaattgttttgaattgaaattacaagaatctaaa----------cacaatgaaagcttg 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||    
T  50534957 ataaaaagacaatgatgtgaattgaaaatcgacgggaagataaattgttttgaattgaaattacaagaatctaaaagaatttaaacacaatgaaagcttg 50535056  T
Q  91 agttcggttttgattaggagtaggatttagaaattaaggatttgactttttgttctttgtaagaattaggtggcattta 169  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50535057 agttcggttttgattaggagtagtatttagaaattaagcatttgactttttgttctttgtaagaattaggtggcattta 50535135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 218 - 332
Target Start/End: Original strand, 50537403 - 50537517
Alignment:
Q  218 catttgatcaaataaagaacacacttttatcatacatccacaacactagatttgtttccaagtcactcttctcccccacctcaaagacttcagctatggc 317  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||| |    
T  50537403 catttgatcaaataaagaacatacttttatcatacatccacaacactatatttgtttccacatcactcttctcccccacctcaaagacttcagctatgac 50537502  T
Q  318 acaatgttccataac 332  Q
    |||||||||||||||    
T  50537503 acaatgttccataac 50537517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 50536132 - 50536192
Alignment:
Q  167 ttaatatggaaaaacttaaaagttttccaccatgggaaaactcattctaaccatttgatca 227  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  50536132 ttaatatggaaaaacttaaaagttttccaccatgggaaagctcattctaaccatttgatca 50536192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 46827888 - 46827962
Alignment:
Q  203 aaaactcattctaaccatttgatcaaataaagaacacacttttatcatacatccacaacactagatttgtttcca 277  Q
    |||||| ||| |||||||| ||| |||||||||||||| |||||||||||||||||| ||| |||||||||||||    
T  46827888 aaaactaattttaaccattagattaaataaagaacacatttttatcatacatccacaccacaagatttgtttcca 46827962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 275
Target Start/End: Original strand, 46820901 - 46820987
Alignment:
Q  189 ttttccaccatgggaaaactcattctaaccatttgatcaaataaagaacacacttttatcatacatccacaacactagatttgtttc 275  Q
    |||||||||||   |||| | ||| |||| ||| ||| |||||||||||||||||||||| |||||||||| ||| |||||| ||||    
T  46820901 ttttccaccatcaaaaaaattattttaactattagattaaataaagaacacacttttatcgtacatccacaccacaagatttttttc 46820987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 7463443 - 7463507
Alignment:
Q  187 agttttccaccatgggaaaactcattctaaccatttgatcaaataaagaacacacttttatcata 251  Q
    ||||| ||||||||||||| || ||| | |||||| ||| |||||||||||||| ||||||||||    
T  7463443 agtttcccaccatgggaaagctaattttgaccattagattaaataaagaacacagttttatcata 7463507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 11426852 - 11426945
Alignment:
Q  158 aggtggcatttaatatggaaaaacttaaaagttttccaccatgggaaaactcattctaaccatttgatcaaataaagaacacacttttatcata 251  Q
    ||||||||||||  ||||||||    || ||||| ||||||||||||| || ||| | |||||| ||| || ||||||||||| ||||||||||    
T  11426852 aggtggcatttagcatggaaaagggaaagagtttcccaccatgggaaagctaattttgaccattagattaactaaagaacacagttttatcata 11426945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 214 - 318
Target Start/End: Original strand, 45546394 - 45546498
Alignment:
Q  214 taaccatttgatcaaataaagaacacacttttatcatacatccacaacactagatttgtttccaagtcactcttctcccccacctcaaagacttcagcta 313  Q
    |||| |||| || ||||| |||||||| |||||||||||| |||||||||||||||||||||||   |||| ||||||||||||||||||||||| ||||    
T  45546394 taactatttaattaaatagagaacacatttttatcatacacccacaacactagatttgtttccacaccactattctcccccacctcaaagacttcggcta 45546493  T
Q  314 tggca 318  Q
    |||||    
T  45546494 tggca 45546498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 45548110 - 45548051
Alignment:
Q  217 ccatttgatcaaataaagaacacacttttatcatacatccacaacactagatttgtttcc 276  Q
    ||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  45548110 ccatttgatcaaataaagaacacacttttatcatacacctataacactagatttgtttcc 45548051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 36318997 - 36319035
Alignment:
Q  37 aagataaattgttttgaattgaaattacaagaatctaaa 75  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  36318997 aagataaattgatttgaattgaaattacaagaatttaaa 36319035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 21853550 - 21853458
Alignment:
Q  159 ggtggcatttaatatggaaaaacttaaaagttttccaccatgggaaaactcattctaaccatttgatcaaataaagaacacacttttatcata 251  Q
    |||||||||||| ||||||||   ||||| ||| ||||||| | |||| | ||  ||||||||||||||||||||| |||||| |||||||||    
T  21853550 ggtggcatttaacatggaaaagggtaaaactttcccaccatagaaaaattaatattaaccatttgatcaaataaagtacacacatttatcata 21853458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 26579342 - 26579274
Alignment:
Q  157 taggtggcatttaatatggaaaaacttaaaagttttccaccatgggaaaactcattctaaccatttgat 225  Q
    |||||||||||||| |||| ||| | ||||| |||||||||||||||||  ||| | ||||||||||||    
T  26579342 taggtggcatttaacatgggaaagcctaaaacttttccaccatgggaaagttcactttaaccatttgat 26579274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 48259832 - 48259775
Alignment:
Q  193 ccaccatgggaaaactcattctaaccatttgatcaaataaagaacacacttttatcat 250  Q
    ||||||||||||||||  |||| |||||| |||| |||||||||||||  ||||||||    
T  48259832 ccaccatgggaaaactttttctgaccattggatctaataaagaacacatctttatcat 48259775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 23383339 - 23383403
Alignment:
Q  188 gttttccaccatgggaaaactcattctaaccatttgatcaaataaagaacacacttttatcatac 252  Q
    |||| |||||||||||||  | ||| || ||||| |||||||| ||||||||||| |||||||||    
T  23383339 gtttcccaccatgggaaagttaattttatccattcgatcaaatgaagaacacactcttatcatac 23383403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University