View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18609_low_2 (Length: 235)
Name: NF18609_low_2
Description: NF18609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18609_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 1182354 - 1182432
Alignment:
| Q |
140 |
cattagaaggagatagatataagagattctgacctaggcacatgcatgatcaaacaaacaataaattcgatagcgatat |
218 |
Q |
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| T |
1182354 |
cattagaaggagatagatataagagattctgacctaggcacatgcatgaacaaacaaacaataaattcgatagcgatat |
1182432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 1172739 - 1172782
Alignment:
| Q |
174 |
taggcacatgcatgatcaaacaaacaataaattcgatagcgata |
217 |
Q |
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| T |
1172739 |
taggcacatgcatgaacaaacaaacaataaattcgatagcgata |
1172782 |
T |
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