View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_high_10 (Length: 434)
Name: NF1860_high_10
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 14 - 426
Target Start/End: Original strand, 34683930 - 34684346
Alignment:
| Q |
14 |
tactcagaatttacggcattttgttagttagtgatgcatggtagtcatcctaccaatttctttagaggctcacgacacctcgcctctaatacttcatgtc |
113 |
Q |
| |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34683930 |
tactgagaatttgcggcattttgttagttagtgatgcatggtagtcatcctaccaatttctttagaggctcacgacacctcgcctctaatacttcatgtc |
34684029 |
T |
|
| Q |
114 |
atagatgtggtgttgttgttgaaaacaatttgcatactctacgggattgtcctagagcaatgtttgtcccacctatcctgacaatttttacatgcatgat |
213 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34684030 |
atagatgtggtgttgttgttgagaacaatttgcatactctacgggattgtcctagagcaatgtttgtcccacctatcctgacaatttttacatgcatgat |
34684129 |
T |
|
| Q |
214 |
atttggtttaaacaccatgctacaatggaggcatgtactaagtttatagtaatttgtttcgaaatttggagaaataaaaatggagattttccaaaatgtg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34684130 |
atttggtttaaacaccatgctacaatggaggcatgtactaagtttatagtaatttgtttcgaaatttggagaaataaaaatggagattttccaaaatgtg |
34684229 |
T |
|
| Q |
314 |
----aagatacttggaattctgtcaacataatctcttatcatgcatctatggtttacgctcttggtattgctagtaagtatcatgtgacccgtcaaattc |
409 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34684230 |
aagaaagatacttgaaattctgtcaacataatctcttatcatgcatctatggtttacgctcttggtattgctagtaagtatcatgtgacccgtcaaattc |
34684329 |
T |
|
| Q |
410 |
attgaaaccccctaaag |
426 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
34684330 |
attgaaaccccctaaag |
34684346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 376
Target Start/End: Original strand, 12238378 - 12238534
Alignment:
| Q |
229 |
catgctacaatggaggcatgtactaagtttatagtaatttgtttcgaaatttggagaaataaaaatggagat--tttccaaaatgtg----aagatactt |
322 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||||| |||||| |||||| |||||||| ||||| | || ||| ||||||||| |||||| || |
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| T |
12238378 |
catgctacaatggaggcaagtaccaagttcatagtaacttgttttaaaatttagagaaatagaaatgaacatatttttcaaaatgtgcagaaagatattt |
12238477 |
T |
|
| Q |
323 |
ggaattctgtcaaca---taatctcttatcatgcatctatggtttacgctcttggta |
376 |
Q |
| |
|
||||||||||||||| |||||| |||||||| |||||||||||||||||||||| |
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| T |
12238478 |
ggaattctgtcaacagcataatcttctatcatgcctctatggtttacgctcttggta |
12238534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 32 - 376
Target Start/End: Original strand, 841056 - 841431
Alignment:
| Q |
32 |
ttttgttagttagtgatgcatggtagtcatcctaccaatttctttagaggctcacgacacctcgcctctaatacttcatgtcatagatgtggtgttgttg |
131 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||||||| || |||| |||||| |||||| |||| ||||||| |||||||||||||||| || || |
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|
| T |
841056 |
ttttgttggttagtgatgcatgatagtcttcctaccaattcattcagagtctcacgtcacctcacctccaatactttttgtcatagatgtggtgctgctg |
841155 |
T |
|
| Q |
132 |
ttgaaaacaatttgcatactctacgggattgtcctagagcaatgt----------------ttgtcccacctatcctgacaatttttacatgcatgata- |
214 |
Q |
| |
|
| || || |||||||||||||||||||||| |||| |||||||| || ||| |||| |||| |||||||||||||||| ||| |
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|
| T |
841156 |
tcgagaatgatttgcatactctacgggattgccctaaagcaatgtcgatttggaaggatgtttatcctacctgtcctaacaatttttacatgcaggattg |
841255 |
T |
|
| Q |
215 |
-----tttggtttaaacaccatgctacaatggaggcatgtactaagtttatagtaatttgtttcgaaatttggagaaataaaaatg--gagattttccaa |
307 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| |||| ||||| ||||||| |||||| |||||||||||||||| ||||| | ||||||||| |
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| T |
841256 |
tcagctttggtttaaacatcatgctacaatagaggcgggtaccaagttcatagtaacttgttttgaaatttggagaaatagaaatgaacatattttccaa |
841355 |
T |
|
| Q |
308 |
aatgtg----aagatacttggaattctgt---caacataatctcttatcatgcatctatggtttacgctcttggta |
376 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
841356 |
aatgtgcagaaagatacttgaaattctgtcaacaacataatctcctatcatgcctctatggtttacgctcttggta |
841431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 360
Target Start/End: Complemental strand, 22778481 - 22778360
Alignment:
| Q |
248 |
gtactaagtttatagtaatttgtttcgaaatttggagaaataaaaatg--gagattttccaaaatgtg----aagatacttggaattctgtcaac---at |
338 |
Q |
| |
|
|||||| ||||||||||| |||||| |||||||||||| || ||||| |||||||| |||||||| |||||||||| |||||| ||||| || |
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| T |
22778481 |
gtactatgtttatagtaacttgttttaaaatttggagaagtagaaatgaaaagattttctaaaatgtgaagaaagatacttgaaattctatcaacaatat |
22778382 |
T |
|
| Q |
339 |
aatctcttatcatgcatctatg |
360 |
Q |
| |
|
||||| |||||||||||||||| |
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| T |
22778381 |
aatcttttatcatgcatctatg |
22778360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 173 - 398
Target Start/End: Complemental strand, 30673145 - 30672906
Alignment:
| Q |
173 |
atgtttgtcccacctatcctgacaatttttacatgcatgat------atttggtttaaacaccatgctacaatggaggcatgtactaagtttatagtaat |
266 |
Q |
| |
|
|||||| |||||| |||||||| ||||||||||| || ||| |||||||||| || |||||||| |||| |||||| |||||| || ||||||| |
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| T |
30673145 |
atgtttctcccacatatcctgataatttttacatacaggattgtcagatttggtttatacgccatgctagaatgaaggcatatactaatttcatagtaac |
30673046 |
T |
|
| Q |
267 |
ttgtttcgaaatttggagaaataaaaatg--gagattttccaaaatgtgaagata---cttggaattctgtcaaca---taatctcttatcatgcatcta |
358 |
Q |
| |
|
|||||| |||||||||| ||| | ||||| ||||||||| |||||| || | | |||||| ||||||||||| ||| |||||||||||| |||| |
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|
| T |
30673045 |
ttgttttgaaatttggaaaaacagaaatgaagagattttctaaaatgcaaaaaaaagacttggatttctgtcaacaacataacctcttatcatgcctcta |
30672946 |
T |
|
| Q |
359 |
tggtttacgctcttggtattgctagtaagtatcatgtgac |
398 |
Q |
| |
|
| ||| ||||||| ||||| |||||||| |||||||||| |
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|
| T |
30672945 |
tagttcacgctctcggtatcactagtaagcatcatgtgac |
30672906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 287
Target Start/End: Complemental strand, 3521219 - 3521147
Alignment:
| Q |
215 |
tttggtttaaacaccatgctacaatggaggcatgtactaagtttatagtaatttgtttcgaaatttggagaaa |
287 |
Q |
| |
|
||||||||||| ||||| |||| | ||||| | ||||||||| ||||||| |||||| |||||||||||||| |
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|
| T |
3521219 |
tttggtttaaaaaccatactactaaggaggtagatactaagttcatagtaacttgttttgaaatttggagaaa |
3521147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 30673220 - 30673158
Alignment:
| Q |
114 |
atagatgtggtgttgttgttgaaaacaatttgcatactctacgggattgtcctagagcaatgt |
176 |
Q |
| |
|
|||||||||||| | ||||||||| |||||||||||||||| ||||| | ||||||||||| |
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|
| T |
30673220 |
atagatgtggtgctattgttgaaagtaatttgcatactctacaagattgccttagagcaatgt |
30673158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 223 - 404
Target Start/End: Original strand, 37481150 - 37481339
Alignment:
| Q |
223 |
aaacaccatgctacaatggaggcatgtactaagtttatagtaatttgtttcgaaatttggagaaataaaaatg--gagattttccaaaatgtg----aag |
316 |
Q |
| |
|
||||| ||||||||||||||| || |||||||||| ||| ||| ||||| |||||||||||||||| ||||| |||||||||||||| || || |
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|
| T |
37481150 |
aaacatcatgctacaatggagacaagtactaagttcatactaacttgttatgaaatttggagaaatagaaatgaacagattttccaaaatatgcagacag |
37481249 |
T |
|
| Q |
317 |
atacttggaattctgtcaa---cataatctcttatcatgcatctatggtttacgctcttggtattgctagtaagtatcatgtgacccgtca |
404 |
Q |
| |
|
|||||| ||||| |||||| |||||||| ||||||||||||| |||||| ||||||| ||| ||||||| |||||||| ||||||| |
|
|
| T |
37481250 |
atactt-gaattatgtcaacatcataatcttttatcatgcatctgtggtttccgctctttgtaccactagtaaccatcatgtggcccgtca |
37481339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 37480990 - 37481068
Alignment:
| Q |
74 |
tttagaggctcacgacacctcgcctctaatacttcatgtcatagatgtggtgttgttgttgaaaacaatttgcatactc |
152 |
Q |
| |
|
||||||| |||| | |||||| |||| |||||||| | |||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
37480990 |
tttagagtctcatgtcacctcacctccaatacttcttttcatagatgtggtgttgttgttgagagtgatttgcatactc |
37481068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 41062666 - 41062759
Alignment:
| Q |
42 |
tagtgatgcatggtagtcatcctaccaatttctttagaggctcacgacacctcgcctctaatacttcatgtcatagatgtggtgttgttgttga |
135 |
Q |
| |
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|||||||||||||||||| || | |||| ||||||| ||||||| |||||| |||| || ||||||||||||||||||| |||||||||||| |
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| T |
41062666 |
tagtgatgcatggtagtcttcatgtcaatgcctttagaagctcacggcacctcacctccaacacttcatgtcatagatgtgatgttgttgttga |
41062759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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