View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1860_high_15 (Length: 391)

Name: NF1860_high_15
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1860_high_15
NF1860_high_15
[»] chr1 (8 HSPs)
chr1 (16-373)||(3446750-3447101)
chr1 (16-83)||(10163212-10163279)
chr1 (16-81)||(3448617-3448682)
chr1 (20-83)||(11670495-11670558)
chr1 (24-70)||(10833822-10833868)
chr1 (16-83)||(11672174-11672241)
chr1 (16-81)||(11673630-11673694)
chr1 (98-158)||(11672102-11672162)
[»] chr6 (2 HSPs)
chr6 (16-81)||(1515165-1515230)
chr6 (16-81)||(2512252-2512317)
[»] chr5 (6 HSPs)
chr5 (17-80)||(13860405-13860468)
chr5 (16-81)||(33625392-33625457)
chr5 (16-83)||(36070441-36070508)
chr5 (20-70)||(40880564-40880614)
chr5 (27-70)||(18024838-18024881)
chr5 (16-81)||(33623105-33623170)
[»] chr2 (6 HSPs)
chr2 (24-83)||(17323130-17323189)
chr2 (24-83)||(29171122-29171181)
chr2 (16-81)||(35549466-35549531)
chr2 (27-83)||(5816787-5816843)
chr2 (24-70)||(41974042-41974088)
chr2 (16-81)||(14392044-14392108)
[»] chr3 (2 HSPs)
chr3 (16-83)||(3956552-3956619)
chr3 (24-64)||(34618618-34618658)
[»] chr8 (3 HSPs)
chr8 (27-77)||(21240551-21240601)
chr8 (16-81)||(38063850-38063915)
chr8 (16-80)||(13014328-13014392)
[»] chr7 (5 HSPs)
chr7 (16-81)||(22130091-22130156)
chr7 (16-81)||(40500950-40501015)
chr7 (98-158)||(41400905-41400965)
chr7 (27-72)||(33542073-33542118)
chr7 (38-83)||(48013261-48013306)
[»] chr4 (1 HSPs)
chr4 (16-81)||(3070963-3071028)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 373
Target Start/End: Complemental strand, 3447101 - 3446750
Alignment:
Q  16 atactcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatggannnnnnnnnnnnnnaattttatcttattctct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||              |||||| |||||||||||    
T  3447101 atactcatatttatttagtgtctgacacacatcatataaaattacttttcatcgaaaaaacttatggatttttttttt----aattttgtcttattctct 3447006  T
Q  116 ttaaacacacttgaaaggcttctattcaaatttcgctttaggcnnnnnnntatatattgggctggccatgagagtatctcaattgtgtagccttaatgta 215  Q
    |||||||||||||||||||||||||||||||||||||||||||        ||||||||||| | ||||||||||||| |||||||||||||||||||||    
T  3447005 ttaaacacacttgaaaggcttctattcaaatttcgctttaggcataaaa--atatattgggccgtccatgagagtatcgcaattgtgtagccttaatgta 3446908  T
Q  216 caacaaaaattgacattattaatcatgggagaaaaggttgagggaacctccaagcaaaattgataaaatgaatagaatcttaaatnnnnnnnttaaatgc 315  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  3446907 caacaaaaattgacattattaatcatgggagaaaaagttgagggaacctccaagcaaaattgataaaatgaatagaatcttaaataaaaaaattaaatgc 3446808  T
Q  316 gccatgttggtgtgtatcttgagaagaacatttgatgaggaatttaatctgattcaac 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3446807 gccatgttggtgtgtatcttgagaagaacatttgatgaggaatttaatctgattcaac 3446750  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 10163212 - 10163279
Alignment:
Q  16 atactcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatgga 83  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||  ||||||||||    
T  10163212 atactcatatttaattagtgtctgatacacatcatatagaattactttcgattgagggaacttatgga 10163279  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 3448682 - 3448617
Alignment:
Q  16 atactcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatg 81  Q
    ||||||||||||| ||||||| |||||| ||||||||| ||||||||| ||||||| |||||||||    
T  3448682 atactcatatttaattagtgtttgacacgcatcatatagaattacttttcattgaggaaacttatg 3448617  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 11670558 - 11670495
Alignment:
Q  20 tcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatgga 83  Q
    ||||||||| |||||||| ||||||||||||||||||||| |||| ||||||  ||||||||||    
T  11670558 tcatatttaattagtgtcagacacacatcatataaaattattttcgattgagggaacttatgga 11670495  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 10833822 - 10833868
Alignment:
Q  24 atttatttagtgtctgacacacatcatataaaattactttccattga 70  Q
    ||||||||||| |||||||||||||||||| |||||||||| |||||    
T  10833822 atttatttagtatctgacacacatcatatagaattactttcgattga 10833868  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 11672241 - 11672174
Alignment:
Q  16 atactcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatgga 83  Q
    ||||||||||||| ||||||||   ||||||||||||||||||| |||| |||||   ||||||||||    
T  11672241 atactcatatttaattagtgtcaatcacacatcatataaaattattttcgattgaaggaacttatgga 11672174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 11673694 - 11673630
Alignment:
Q  16 atactcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatg 81  Q
    ||||| ||||||| |||||||| |||||||||||||| |||||| |||| ||||||  ||||||||    
T  11673694 atacttatatttaattagtgtcagacacacatcatat-aaattattttcgattgagggaacttatg 11673630  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 11672162 - 11672102
Alignment:
Q  98 aattttatcttattctctttaaacacacttgaaaggcttctattcaaatttcgctttaggc 158  Q
    |||||| ||||||||||| ||||  ||||| |||||  |||||| ||||||||||||||||    
T  11672162 aattttgtcttattctctctaaatgcacttaaaaggtctctatttaaatttcgctttaggc 11672102  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 1515230 - 1515165
Alignment:
Q  16 atactcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatg 81  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| |||| ||| ||| ||||||||    
T  1515230 atactcatatttatttagtgtctaacatacatcatataaaattagtttcaatttagagaacttatg 1515165  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 2512317 - 2512252
Alignment:
Q  16 atactcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatg 81  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||  ||||||||    
T  2512317 atactcatatttaattagtgtcggagacacatcatataaaattactttcgattgagggaacttatg 2512252  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 13860405 - 13860468
Alignment:
Q  17 tactcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttat 80  Q
    |||||||||||| ||||| || |||||||||||||||||||||||||| ||||||  |||||||    
T  13860405 tactcatatttaattagtatcagacacacatcatataaaattactttcgattgagggaacttat 13860468  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 33625457 - 33625392
Alignment:
Q  16 atactcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatg 81  Q
    ||||||||||||||||||||||| ||  |||||||||| |||||||||  |||||| |||||||||    
T  33625457 atactcatatttatttagtgtctaacgtacatcatatataattacttttgattgaggaaacttatg 33625392  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 36070508 - 36070441
Alignment:
Q  16 atactcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatgga 83  Q
    |||||||| |||| |||||||||||||||||||||||| |||| ||||| | | || |||||||||||    
T  36070508 atactcatgtttaattagtgtctgacacacatcatatagaattgctttcgactcaggaaacttatgga 36070441  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 40880564 - 40880614
Alignment:
Q  20 tcatatttatttagtgtctgacacacatcatataaaattactttccattga 70  Q
    ||||||||| ||||||||||| |||||||||||| |||||||||| |||||    
T  40880564 tcatatttaattagtgtctgaaacacatcatatagaattactttcgattga 40880614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 18024838 - 18024881
Alignment:
Q  27 tatttagtgtctgacacacatcatataaaattactttccattga 70  Q
    |||||||||||| |||||||||||||| |||||||||| |||||    
T  18024838 tatttagtgtctaacacacatcatatagaattactttcgattga 18024881  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 33623170 - 33623105
Alignment:
Q  16 atactcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatg 81  Q
    ||||||||||||||||||||||  ||  |||||||||| |||||||||  |||||| ||| |||||    
T  33623170 atactcatatttatttagtgtcaaacgtacatcatatataattacttttgattgaggaaatttatg 33623105  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 17323189 - 17323130
Alignment:
Q  24 atttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatgga 83  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||   ||||||||||    
T  17323189 atttatttagtgtctgacacacatcatatagaattactttcgattgaaggaacttatgga 17323130  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 29171181 - 29171122
Alignment:
Q  24 atttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatgga 83  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||   ||||||||||    
T  29171181 atttatttagtgtctgacacacatcatatagaattactttcgattgaaggaacttatgga 29171122  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 35549531 - 35549466
Alignment:
Q  16 atactcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatg 81  Q
    ||||||||||||| | ||||||||||||| |||||||| |||||||||| ||||||  ||||||||    
T  35549531 atactcatatttaatcagtgtctgacacaaatcatatagaattactttcgattgagggaacttatg 35549466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 5816787 - 5816843
Alignment:
Q  27 tatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatgga 83  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||  ||||||||||    
T  5816787 tatttagtgtctaacacacatcatataaaattacttttgattgagggaacttatgga 5816843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 41974042 - 41974088
Alignment:
Q  24 atttatttagtgtctgacacacatcatataaaattactttccattga 70  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||    
T  41974042 atttatttggtgtccgacacacatcatatagaattactttccattga 41974088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 14392044 - 14392108
Alignment:
Q  16 atactcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatg 81  Q
    ||||||||||||||||||||||| |||  ||||||||| |||||||||| ||||||  ||||||||    
T  14392044 atactcatatttatttagtgtctaaca-tcatcatatagaattactttcaattgagggaacttatg 14392108  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 3956619 - 3956552
Alignment:
Q  16 atactcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatgga 83  Q
    ||||||||||||| ||||||| ||||| | |||||||| |||||||||| ||||||  ||||||||||    
T  3956619 atactcatatttaattagtgtttgacaaagatcatatagaattactttcgattgagggaacttatgga 3956552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 34618658 - 34618618
Alignment:
Q  24 atttatttagtgtctgacacacatcatataaaattactttc 64  Q
    ||||| |||||||| ||||||||||||||||||||| ||||    
T  34618658 atttaattagtgtcggacacacatcatataaaattaatttc 34618618  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 21240551 - 21240601
Alignment:
Q  27 tatttagtgtctgacacacatcatataaaattactttccattgagaaaact 77  Q
    |||||||||||| |||||||||||||| |||||||||| |||||| |||||    
T  21240551 tatttagtgtctcacacacatcatatagaattactttcgattgaggaaact 21240601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 38063915 - 38063850
Alignment:
Q  16 atactcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatg 81  Q
    ||||||||||||| ||| ||||| ||||||||| | || |||||||||| |||||| |||||||||    
T  38063915 atactcatatttaattaatgtctaacacacatcttgtagaattactttcgattgaggaaacttatg 38063850  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 13014392 - 13014328
Alignment:
Q  16 atactcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttat 80  Q
    ||||||||||||| ||||| ||| | ||| |||||||| |||||||||| ||||| |||| ||||    
T  13014392 atactcatatttaattagtatctcatacatatcatatagaattactttcgattgaaaaaagttat 13014328  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 22130156 - 22130091
Alignment:
Q  16 atactcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatg 81  Q
    |||||||| |||| ||||||| ||||| |||||||||||||||| |||| ||| || |||||||||    
T  22130156 atactcatgtttaattagtgtatgacatacatcatataaaattattttcgattaaggaaacttatg 22130091  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 40500950 - 40501015
Alignment:
Q  16 atactcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatg 81  Q
    |||||||| |||| ||||||| ||||| |||||||||||||||| |||| ||| || |||||||||    
T  40500950 atactcatgtttaattagtgtatgacatacatcatataaaattattttcgattaaggaaacttatg 40501015  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 41400905 - 41400965
Alignment:
Q  98 aattttatcttattctctttaaacacacttgaaaggcttctattcaaatttcgctttaggc 158  Q
    |||||| ||||||| ||| ||||||||||| ||| |||| |||| ||||||||||||||||    
T  41400905 aattttgtcttattttctctaaacacacttaaaaagcttttatttaaatttcgctttaggc 41400965  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 33542118 - 33542073
Alignment:
Q  27 tatttagtgtctgacacacatcatataaaattactttccattgaga 72  Q
    |||||| |||||||||| ||||| |||||||||||||| |||||||    
T  33542118 tatttaatgtctgacacgcatcaaataaaattactttcaattgaga 33542073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 48013306 - 48013261
Alignment:
Q  38 tgacacacatcatataaaattactttccattgagaaaacttatgga 83  Q
    |||||||||||||||| ||||||| || ||||||||||| ||||||    
T  48013306 tgacacacatcatatagaattactatcgattgagaaaacatatgga 48013261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 3071028 - 3070963
Alignment:
Q  16 atactcatatttatttagtgtctgacacacatcatataaaattactttccattgagaaaacttatg 81  Q
    ||||||||||||| |||||||||||  || |||||| | ||||||||| |||||||  ||||||||    
T  3071028 atactcatatttaattagtgtctgaagcatatcatagataattacttttcattgagggaacttatg 3070963  T

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