View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_high_28 (Length: 305)
Name: NF1860_high_28
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 287
Target Start/End: Complemental strand, 25064177 - 25063908
Alignment:
| Q |
14 |
agaacaattgcaaccaaaatctaacaacaacatgatgaactttatctaatggacaagaaacaacaatactatatataatttttccaaccagattactcta |
113 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25064177 |
agaacaattgcaaccaaaatctaacaaca---tgatgaactttatctaatggacaagaaacaacaatactatatataatttttccaaccagat-actcta |
25064082 |
T |
|
| Q |
114 |
tcaaaagttacagctttacaagaaacttctggctgatggattaaaatcctttgagttactctttcccgatctgcttcgcctatagctcttcaacggtgtc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25064081 |
tcaaaagttacagctttacaagaaacttctggctgatggattaaaatcctttgagttactctttcccgatctgcttcgcctatagctcttcaacggtgtc |
25063982 |
T |
|
| Q |
214 |
aaatagaatctcaacaacccggtgtcaacattactcgtcgaatacctaacactccgatttctttgaagcgttaa |
287 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25063981 |
aaatagaatctcaacaacccggtgtcaacattacttgtcgaatacctaacactccgatttctttgaagcgttaa |
25063908 |
T |
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