View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1860_high_30 (Length: 300)

Name: NF1860_high_30
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1860_high_30
NF1860_high_30
[»] chr4 (1 HSPs)
chr4 (1-300)||(52580175-52580474)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 52580175 - 52580474
Alignment:
Q  1 gacgtttctttcgattatctgtataatgtatagagagacaaattaacagttacttgtataaattgtatttacataagtttataaaattcattatgattat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52580175 gacgtttctttcgattatctgtataatgtatagagagacaaattaacagttacttgtataaattgtatttacataagtttataaaattcattatgattat 52580274  T
Q  101 atcatcatgtacaaaataaacattgtgcccactacaaaactttcaaaatttactatttgaggcacaagtttattattggttagtccaaaagaaaagctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52580275 atcatcatgtacaaaataaacattgtgcccactacaaaactttcaaaatttactatttgaggcacaagtttattattggttagtccaaaagaaaagctta 52580374  T
Q  201 gaattgaatctttgcttgcagctacgccttgtaagttttggcttagtgcttcgtggagtttccactgcctcaggcttgaggtttaagcctaacatgttcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52580375 gaattgaatctttgcttgcagctacgccttgtaagttttggcttagtgcttcgtggagtttccactgcctcaggcttgaggtttaagcctaacatgttcc 52580474  T

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