View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1860_high_35 (Length: 282)

Name: NF1860_high_35
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1860_high_35
NF1860_high_35
[»] chr4 (5 HSPs)
chr4 (28-215)||(40798105-40798292)
chr4 (35-121)||(22398377-22398463)
chr4 (58-102)||(46144951-46144995)
chr4 (1-30)||(1982557-1982586)
chr4 (58-127)||(40796911-40796979)
[»] chr3 (4 HSPs)
chr3 (28-133)||(29125649-29125755)
chr3 (45-110)||(20824739-20824804)
chr3 (1-30)||(24910391-24910420)
chr3 (58-102)||(20847782-20847826)
[»] chr5 (7 HSPs)
chr5 (47-118)||(32261392-32261463)
chr5 (58-102)||(17495788-17495832)
chr5 (58-96)||(27022835-27022873)
chr5 (57-95)||(32700593-32700631)
chr5 (72-122)||(36868070-36868120)
chr5 (58-122)||(11317780-11317843)
chr5 (1-29)||(28143335-28143363)
[»] chr2 (5 HSPs)
chr2 (62-117)||(11319155-11319210)
chr2 (1-30)||(33607039-33607068)
chr2 (58-102)||(37610705-37610749)
chr2 (1-29)||(38490503-38490531)
chr2 (1-29)||(41164751-41164779)
[»] scaffold0277 (2 HSPs)
scaffold0277 (61-122)||(6196-6257)
scaffold0277 (61-122)||(14941-15002)
[»] chr6 (2 HSPs)
chr6 (61-122)||(28779956-28780017)
chr6 (1-30)||(8939622-8939651)
[»] chr1 (2 HSPs)
chr1 (157-213)||(9117502-9117558)
chr1 (61-122)||(52281456-52281516)
[»] chr7 (4 HSPs)
chr7 (58-109)||(41664236-41664287)
chr7 (1-30)||(29151579-29151608)
chr7 (1-30)||(35849291-35849320)
chr7 (58-102)||(18891964-18892008)
[»] chr8 (5 HSPs)
chr8 (47-137)||(8411901-8411996)
chr8 (58-95)||(33431346-33431383)
chr8 (58-102)||(1806856-1806900)
chr8 (1-29)||(4977137-4977165)
chr8 (1-29)||(36586479-36586507)
[»] scaffold0179 (1 HSPs)
scaffold0179 (1-29)||(4118-4146)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-29)||(90566-90594)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 40798105 - 40798292
Alignment:
Q  28 agagttttatttatttaatgagaataaataaaaatcaattgtgtgtgatttatctaataatcaaaattaatttttcaatttaaaagtaataatattaatt 127  Q
    ||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40798105 agagttttatttaattaatgagaataaataaaaatcaattatatgtgatttatctaataatcaaaattaattttttaatttaaaagtaataatattaatt 40798204  T
Q  128 gtgtttctatattatcgttaatgaatatggttaaataagtttattgtccctagaaatataaaaaatattgattttaggtcctaaaagt 215  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  40798205 gtgtttctatattatcgttaatgaatatggttaaataagtttcttgtccctagaaatataaacaatattgattttaggtcctaaaagt 40798292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 22398377 - 22398463
Alignment:
Q  35 tatttatttaatgagaataaataaaaatcaattgtgtgtgatttatctaataatcaaaattaatttttcaatttaaaagtaataata 121  Q
    |||||| ||||||||||| |   ||||||||| ||||||||||||||||||  |||||||| | |||| ||||||||| ||||||||    
T  22398377 tatttaattaatgagaatgagagaaaatcaatggtgtgtgatttatctaattttcaaaattgaatttttaatttaaaattaataata 22398463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 46144951 - 46144995
Alignment:
Q  58 aaaatcaattgtgtgtgatttatctaataatcaaaattaattttt 102  Q
    |||||||||||||| |||||||||||||| |||||||||||||||    
T  46144951 aaaatcaattgtgtatgatttatctaatattcaaaattaattttt 46144995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 1982586 - 1982557
Alignment:
Q  1 ttgccagttgagctaggacttctggataga 30  Q
    ||||||||||||||||||||||||||||||    
T  1982586 ttgccagttgagctaggacttctggataga 1982557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 40796911 - 40796979
Alignment:
Q  58 aaaatcaattgtgtgtgatttatctaataatcaaaattaatttttcaatttaaaagtaataatattaatt 127  Q
    |||||||||| |||||||||||| || || |  ||||| |||||| |||||||||||||| |||||||||    
T  40796911 aaaatcaattttgtgtgatttatatagtatttgaaattgattttt-aatttaaaagtaatgatattaatt 40796979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 29125755 - 29125649
Alignment:
Q  28 agagttttatttatttaatgagaataaataaaaatcaattgtgtgtgatttatctaataatcaaaattaatttttcaatttaaaagtaat--aatattaa 125  Q
    ||||| ||||||| || ||||||||||  ||||||||||| |||||||||||||||||| | ||||||||| ||| ||||||| | ||||   |||||||    
T  29125755 agagtcttatttaattcatgagaataag-aaaaatcaattttgtgtgatttatctaatatttaaaattaatattttaatttaagattaatgatatattaa 29125657  T
Q  126 ttgtgttt 133  Q
    ||||||||    
T  29125656 ttgtgttt 29125649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 20824739 - 20824804
Alignment:
Q  45 atgagaataaataaaaatcaattgtgtgtgatttatctaataatcaaaattaatttttcaatttaa 110  Q
    ||||||||||   ||||||||||||||||||||||   |||| |||||||| |||||| |||||||    
T  20824739 atgagaataagagaaaatcaattgtgtgtgatttactgaatattcaaaattgattttttaatttaa 20824804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 24910391 - 24910420
Alignment:
Q  1 ttgccagttgagctaggacttctggataga 30  Q
    ||||||||||||||||||||||||||||||    
T  24910391 ttgccagttgagctaggacttctggataga 24910420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 20847782 - 20847826
Alignment:
Q  58 aaaatcaattgtgtgtgatttatctaataatcaaaattaattttt 102  Q
    ||||||||||||||||||||||||||| | | ||||| |||||||    
T  20847782 aaaatcaattgtgtgtgatttatctaacatttaaaatcaattttt 20847826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 32261392 - 32261463
Alignment:
Q  47 gagaataaataaaaatcaattgtgtgtgatttatctaataatcaaaattaatttttcaatttaaaagtaata 118  Q
    |||||||||  || ||||||||||||||||| |||||||| | |||||| |||||| ||||||||| |||||    
T  32261392 gagaataaaataatatcaattgtgtgtgattcatctaatacttaaaattgattttttaatttaaaattaata 32261463  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 17495788 - 17495832
Alignment:
Q  58 aaaatcaattgtgtgtgatttatctaataatcaaaattaattttt 102  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||    
T  17495788 aaaatcaaatgtgtgtaatttatctaatattcaaaattaattttt 17495832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 27022835 - 27022873
Alignment:
Q  58 aaaatcaattgtgtgtgatttatctaataatcaaaatta 96  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  27022835 aaaatcaattgtgtgtgacttatctaatattcaaaatta 27022873  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 32700593 - 32700631
Alignment:
Q  57 aaaaatcaattgtgtgtgatttatctaataatcaaaatt 95  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  32700593 aaaaatcaattgtttatgatttatctaataatcaaaatt 32700631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 36868070 - 36868120
Alignment:
Q  72 gtgatttatctaataatcaaaattaatttttcaatttaaaagtaataatat 122  Q
    ||||||||||||||| | |||||| |||||| ||||||||| |||||||||    
T  36868070 gtgatttatctaatattaaaaattgattttttaatttaaaattaataatat 36868120  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 11317780 - 11317843
Alignment:
Q  58 aaaatcaattgtgtgtgatttatctaataatcaaaattaatttttcaatttaaaagtaataatat 122  Q
    |||||||||  ||||| |||||||||||| |||||||| | |||||||||||||| |||| ||||    
T  11317780 aaaatcaatcatgtgtaatttatctaatattcaaaattga-ttttcaatttaaaattaatgatat 11317843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 28143335 - 28143363
Alignment:
Q  1 ttgccagttgagctaggacttctggatag 29  Q
    |||||||||||||||||||||||||||||    
T  28143335 ttgccagttgagctaggacttctggatag 28143363  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 11319210 - 11319155
Alignment:
Q  62 tcaattgtgtgtgatttatctaataatcaaaattaatttttcaatttaaaagtaat 117  Q
    |||||||||| |||||||||||| | ||||||||||||||| ||||||||| ||||    
T  11319210 tcaattgtgtatgatttatctaacattcaaaattaattttttaatttaaaattaat 11319155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 33607068 - 33607039
Alignment:
Q  1 ttgccagttgagctaggacttctggataga 30  Q
    ||||||||||||||||||||||||||||||    
T  33607068 ttgccagttgagctaggacttctggataga 33607039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 37610705 - 37610749
Alignment:
Q  58 aaaatcaattgtgtgtgatttatctaataatcaaaattaattttt 102  Q
    ||||||||||||||||||||| || |||| |||||||| ||||||    
T  37610705 aaaatcaattgtgtgtgatttgtccaatattcaaaattgattttt 37610749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 38490503 - 38490531
Alignment:
Q  1 ttgccagttgagctaggacttctggatag 29  Q
    |||||||||||||||||||||||||||||    
T  38490503 ttgccagttgagctaggacttctggatag 38490531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 41164751 - 41164779
Alignment:
Q  1 ttgccagttgagctaggacttctggatag 29  Q
    |||||||||||||||||||||||||||||    
T  41164751 ttgccagttgagctaggacttctggatag 41164779  T

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Target: scaffold0277 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 6196 - 6257
Alignment:
Q  61 atcaattgtgtgtgatttatctaataatcaaaattaatttttcaatttaaaagtaataatat 122  Q
    ||||| |||||||  ||||||||||| ||||||||||||||| ||||||||| |||| ||||    
T  6196 atcaaatgtgtgtcgtttatctaatactcaaaattaatttttaaatttaaaattaattatat 6257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 14941 - 15002
Alignment:
Q  61 atcaattgtgtgtgatttatctaataatcaaaattaatttttcaatttaaaagtaataatat 122  Q
    ||||| |||||||  ||||||||||| ||||||||||||||| ||||||||| |||| ||||    
T  14941 atcaaatgtgtgtcgtttatctaatactcaaaattaatttttaaatttaaaattaattatat 15002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 28780017 - 28779956
Alignment:
Q  61 atcaattgtgtgtgatttatctaataatcaaaattaatttttcaatttaaaagtaataatat 122  Q
    ||||| |||||||  ||||||||||| ||||||||||||||| ||||||||| |||| ||||    
T  28780017 atcaaatgtgtgtcgtttatctaatactcaaaattaatttttaaatttaaaattaattatat 28779956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 8939651 - 8939622
Alignment:
Q  1 ttgccagttgagctaggacttctggataga 30  Q
    ||||||||||||||||||||||||||||||    
T  8939651 ttgccagttgagctaggacttctggataga 8939622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 9117558 - 9117502
Alignment:
Q  157 gttaaataagtttattgtccctagaaatataaaaaatattgattttaggtcctaaaa 213  Q
    ||||||||||||| ||||||||| |||||||| |||| |||||||||| || |||||    
T  9117558 gttaaataagttttttgtccctataaatataacaaattttgattttagttcttaaaa 9117502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 52281456 - 52281516
Alignment:
Q  61 atcaattgtgtgtgatttatctaataatcaaaattaatttttcaatttaaaagtaataatat 122  Q
    |||||| |||||||||||||||||| ||||||| | |||||| ||||||||  |||||||||    
T  52281456 atcaatcgtgtgtgatttatctaat-atcaaaaattattttttaatttaaacttaataatat 52281516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 41664236 - 41664287
Alignment:
Q  58 aaaatcaattgtgtgtgatttatctaataatcaaaattaatttttcaattta 109  Q
    ||||||||| |||||||||||||||| ||||||||||  |||||| ||||||    
T  41664236 aaaatcaatcgtgtgtgatttatctagtaatcaaaatatattttttaattta 41664287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 29151608 - 29151579
Alignment:
Q  1 ttgccagttgagctaggacttctggataga 30  Q
    ||||||||||||||||||||||||||||||    
T  29151608 ttgccagttgagctaggacttctggataga 29151579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 35849320 - 35849291
Alignment:
Q  1 ttgccagttgagctaggacttctggataga 30  Q
    ||||||||||||||||||||||||||||||    
T  35849320 ttgccagttgagctaggacttctggataga 35849291  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 18891964 - 18892008
Alignment:
Q  58 aaaatcaattgtgtgtgatttatctaataatcaaaattaattttt 102  Q
    |||||||| |||||| ||| ||||||||| |||||||||||||||    
T  18891964 aaaatcaaatgtgtgcgatatatctaatattcaaaattaattttt 18892008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 8411901 - 8411996
Alignment:
Q  47 gagaataaataaaaatcaattgtgtgtgatttatctaataatcaaaatta---atttttcaatttaaaagtaa--taatattaattgtgtttctat 137  Q
    |||||| |||||| ||||||||||| ||||| || ||||| |||||||||   |||||| ||||||||  |||  | |||||||||||||||||||    
T  8411901 gagaatgaataaagatcaattgtgtatgattcatataatattcaaaattatatattttttaatttaaacttaacgttatattaattgtgtttctat 8411996  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 33431383 - 33431346
Alignment:
Q  58 aaaatcaattgtgtgtgatttatctaataatcaaaatt 95  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  33431383 aaaatcaattgtgtatgatttatctaatattcaaaatt 33431346  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 1806856 - 1806900
Alignment:
Q  58 aaaatcaattgtgtgtgatttatctaataatcaaaattaattttt 102  Q
    |||||||||||| | |||||||||||||||| |||||||| ||||    
T  1806856 aaaatcaattgtatatgatttatctaataattaaaattaaatttt 1806900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 4977137 - 4977165
Alignment:
Q  1 ttgccagttgagctaggacttctggatag 29  Q
    |||||||||||||||||||||||||||||    
T  4977137 ttgccagttgagctaggacttctggatag 4977165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 36586507 - 36586479
Alignment:
Q  1 ttgccagttgagctaggacttctggatag 29  Q
    |||||||||||||||||||||||||||||    
T  36586507 ttgccagttgagctaggacttctggatag 36586479  T

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Target: scaffold0179 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 4118 - 4146
Alignment:
Q  1 ttgccagttgagctaggacttctggatag 29  Q
    |||||||||||||||||||||||||||||    
T  4118 ttgccagttgagctaggacttctggatag 4146  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 90594 - 90566
Alignment:
Q  1 ttgccagttgagctaggacttctggatag 29  Q
    |||||||||||||||||||||||||||||    
T  90594 ttgccagttgagctaggacttctggatag 90566  T

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