View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_high_4 (Length: 475)
Name: NF1860_high_4
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 38520994 - 38520811
Alignment:
| Q |
17 |
aaatggttatgttgttgtcttgttcttctctttcaccattctttcatattccaaattttttgatcaaaccaaggaagacacaactactgtgtaaggttcc |
116 |
Q |
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| T |
38520994 |
aaatggttacgttgttgtcttgttcttctctttcaccattctttcatattccaaattttttgatcaaaccaaggaagacacaactactatgtaatgttcc |
38520895 |
T |
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| Q |
117 |
tccatttcatcaaactaaacttcaatccacttctttgtatcttccttcttctatgaatagaaaaaaccttcacaaatgcttctc |
200 |
Q |
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| T |
38520894 |
tccatttcatcaaactaaacttcaatccacttctttgtatcttccttcttctatgaatagaaaaaaccttcacaaatgcttctc |
38520811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 267 - 375
Target Start/End: Complemental strand, 38520744 - 38520636
Alignment:
| Q |
267 |
ttcatttcaatttgagcgtttgttttcaaaccttaatcaagccacttttaagagagaacctggttagtacattgctatttgcatacctcttttttctctt |
366 |
Q |
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| T |
38520744 |
ttcatttcaatttgagcgtttgttttcaaaccttaatcaagtcacttttaagagagaacctggttagtacattgctatttgcatacctcttttttctctt |
38520645 |
T |
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| Q |
367 |
atatttatc |
375 |
Q |
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||||||||| |
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| T |
38520644 |
atatttatc |
38520636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 475
Target Start/End: Complemental strand, 38520571 - 38520535
Alignment:
| Q |
439 |
cttacttgtgtttaacattaacaggaagcttatctag |
475 |
Q |
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| T |
38520571 |
cttacctgtgtttaacattaacaggaagcttatctag |
38520535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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