View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_high_47 (Length: 237)
Name: NF1860_high_47
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_high_47 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38485174 - 38485394
Alignment:
| Q |
1 |
tgatcattcaattgagattgggaaattcaccaaagtattcaaaactactgcacttccccagctccatagcaagttgataaaacttcttgaattgttaaat |
100 |
Q |
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| T |
38485174 |
tgatcattcaattgagattgggaaattcaccaaagtattcaaaactactgcacttccccagctccatagcaagttgataaaacttcttgaattgttaaat |
38485273 |
T |
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| Q |
101 |
aatggaaagaaagattctaaccgattggtggacacccttcaggctctttatgagatttctatccgagattttttcaaggagaaaagggataacgaacggc |
200 |
Q |
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| T |
38485274 |
aatggaaagaaagattctaaccgattggtggacacccttcaggctctttatgagatttctatccgagattttttcaaggagaaaagggataacgaacggc |
38485373 |
T |
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| Q |
201 |
taaaggaggatggtttggctc |
221 |
Q |
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| T |
38485374 |
taaaggaggatggtttggctc |
38485394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 30119581 - 30119749
Alignment:
| Q |
12 |
ttgagattgggaaattcaccaaagtattcaaaactactgcacttccccagctccatagcaagttgataaaacttcttgaattgttaaataatggaaagaa |
111 |
Q |
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| T |
30119581 |
ttgagattgagaaattcactaatacattcaaaacaactgcactgccccagcttcaccacaagttgataaaacttgtcgagttattgaacaagcctgtcaa |
30119680 |
T |
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| Q |
112 |
agattctaaccgattggtggacacccttcaggctctttatgagatttctatccgagattttttcaagga |
180 |
Q |
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| T |
30119681 |
agattctaatcaagtggtgaatacccttcaggcgctttatgagattgctatcagagaccttttcaagga |
30119749 |
T |
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