View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_high_53 (Length: 228)
Name: NF1860_high_53
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_high_53 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 47119970 - 47120175
Alignment:
| Q |
17 |
tttaaatcccacggtagcaccctcgccggtttacgcgcactaggctatgatatcaccgccgaagaataccacgggtaactaattagcttatgcataatca |
116 |
Q |
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| T |
47119970 |
tttaaatcccacggtagcaccctcgccggtttacgcgcactaggctatgatatcaccgccgaagaataccacgggtaac---ttagcttatgcataatca |
47120066 |
T |
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| Q |
117 |
caatgaatcatcgtgattttgacatacacttaatttaattta-----aacataactactttgtattttactccaaagtagcatgatgctaattaagtttt |
211 |
Q |
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| T |
47120067 |
cagtggatcattgtgattttgacatacacttaatttaatttaaacataacataactactttgtattttactccaaagtagcatgatgctaattaagtttt |
47120166 |
T |
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| Q |
212 |
cgttcttct |
220 |
Q |
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||||||||| |
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| T |
47120167 |
cgttcttct |
47120175 |
T |
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