View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_low_1 (Length: 605)
Name: NF1860_low_1
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Original strand, 25064236 - 25064829
Alignment:
| Q |
1 |
taaatttctggttgcaacattgctaggagtaacatgatacacaacactagattttgcttagattttattgctgaaacactttttaatctgggtaagatgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25064236 |
taaatttctggttgcaacattgctaggagtaacatgatacacaacactagattttgcttagattttattgctgaaacactttttaatctgggtaagatgc |
25064335 |
T |
|
| Q |
101 |
atgttaggttttcatagcttgttcaggtagcatggaaatgctttaccttccaatttctggcccatagtatgtaactttcccctgtatttttatgcttaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25064336 |
atgttaggttttcatagcttgttcaggtagcatggaaatgctttaccttccaatttctggcccatagtatgtaactttcccctgtatttttatgcttaaa |
25064435 |
T |
|
| Q |
201 |
ctagtacacgttaatgatatagatgctcttattcttgaatcttgatatattatctataaattagaaatgaatgttatgaattggccttgagttcctgatt |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25064436 |
ttagtacacattaatgatatagatgctcttattcttgaatcttgatatataatctataaattagaaatgaatgttatgaattggccttgagttcctgatt |
25064535 |
T |
|
| Q |
301 |
taacagaagaggtatgaccataaaa-ttttaagacagctatttgatttgtaatttggtatatcataatcataattcataagaacaatttaatacaggatt |
399 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25064536 |
taacagatgaggtatgaccataaaagttttaagacagctatttgatttgtaatttggtatatcataatcataattcataagaacaatttaatacaggatt |
25064635 |
T |
|
| Q |
400 |
ataaattaattttaacagagttacataaatcaaaattaggataatcccatctcatcaaagtttgtatgctattgcttaatacttcactcatgtggtttgg |
499 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25064636 |
ataaattaattttaac--agttacataaatcaaaattaggataatcccatctcatcaaagtttgtatgcgattgcttaatacttcactcatgtggtttgg |
25064733 |
T |
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| Q |
500 |
cttgaaactggatatggcagactcaaaatctagtttacttgtattagagtttaaagatatatgttggtgcttagcctctgcatttgtaacgttcat |
595 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25064734 |
cttgaaactggatatggcagactcaaaatctagtttacttgtattagagtttaaagatatatgttggtgcttagcctctgcatttgtaacgttcat |
25064829 |
T |
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