View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_low_14 (Length: 403)
Name: NF1860_low_14
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 60 - 394
Target Start/End: Original strand, 441470 - 441803
Alignment:
| Q |
60 |
atagatccataaataattaggcttaggtaatgtgggttgagtcgggttgactcactaggtttgtatgccgatccacacccatgaacacaactaaacatga |
159 |
Q |
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| T |
441470 |
atagatccataaataattaggcttaggcaatgtgggttgagtcgggttgactcactaggtttgtatgccgatccacacccatgaacacaactaaacatga |
441569 |
T |
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| Q |
160 |
gttttgtgttacctttataccaaaatctaaattttgaaaaagacttctcaattaaagatgttttagggttcatgtgacccattcaatctgattcgataat |
259 |
Q |
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| T |
441570 |
gttgtgtgttacctttataccaaaatctaaattttgaaaaagacttctcaattaaagatgttttagggtacaggtgacccattcaatctgattcgataat |
441669 |
T |
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| Q |
260 |
ccaaatgaagctaaattttattttatttcaatttattcgagatcgggtccaactgaactcaacttgtttaaatctgaaatgttttcgttttttgggtaat |
359 |
Q |
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| T |
441670 |
ccaaatgaagctaacttctattttatttcaatttattcgagatcgggtccaactgaactcaacttgttcaaatctgaaatgttttcg-tttttgggtaat |
441768 |
T |
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| Q |
360 |
aaattttcaagttcaaatcgtagaatttagtataa |
394 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
441769 |
aaatgttcaagttcaaatcgtagaatttagtataa |
441803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 440974 - 441022
Alignment:
| Q |
16 |
caccttcaatctaaaaaatatgtactagcccaccaataataagaataga |
64 |
Q |
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| T |
440974 |
caccttcaatctaaaaaatatgtactagcccaccaataataagaataga |
441022 |
T |
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