View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_low_16 (Length: 370)
Name: NF1860_low_16
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 100 - 350
Target Start/End: Complemental strand, 40838460 - 40838210
Alignment:
| Q |
100 |
cttcatcgttgtaatgtttgtgacaatggcttaattgatgttagtttatcaaaaataagataaaacgtatgtgagcgcctcaaaactcaactcatatatt |
199 |
Q |
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| T |
40838460 |
cttcatcgttgtaatgtttgtgacaatggcttaattgatgttagtttgtcaaaaataagataaaacatatgtgagcgcctcaaaactcaactcatatatt |
40838361 |
T |
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| Q |
200 |
tattttatatttctttgtcaaatcgacaccaatgtctcaatcatgaaaaccaaaaagatgtgagctagaacttctacttgtagaaaacggcaccaatcgt |
299 |
Q |
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| T |
40838360 |
tattttatatttctttgttaaatcgacaccaatgtctcaatcatgaaaacgaaaaagatgtgagctagaacttctacttgtagaaaacggcaccaatcgt |
40838261 |
T |
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| Q |
300 |
cgttagtattttatgcaactttctacttgcctaatatcctattaatatgtg |
350 |
Q |
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| T |
40838260 |
cgttagtattttatgcaactttctacttgcctaatatcctattaatatgtg |
40838210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 40838603 - 40838500
Alignment:
| Q |
1 |
ctcgtttttaaaaaactttgatggaataccacataacaattcaacccttgaggcgcatgctgaactgatttttgaaatggttagtacaatcattcgaaac |
100 |
Q |
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| T |
40838603 |
ctcgtttttaaaaaactttgatggaataccacataacaattcaacccttgaggcgcatgctgaactgatttttgaaatggttagtacaatcattcgaaac |
40838504 |
T |
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| Q |
101 |
ttca |
104 |
Q |
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|||| |
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| T |
40838503 |
ttca |
40838500 |
T |
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