View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_low_19 (Length: 357)
Name: NF1860_low_19
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 12095197 - 12095102
Alignment:
| Q |
17 |
acaaaatacaccactttctgttatactcactcaataacagaaagtatattcaataaattttataacgtcgaaaaagagtagagaaaggcaggatca |
112 |
Q |
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| T |
12095197 |
acaaaatacaccactttctgttatactcattcaataacagaaagtatattcaataaattttataacgtcgaaaaagagtagagaaaggcaggatca |
12095102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 106 - 253
Target Start/End: Complemental strand, 12106792 - 12106652
Alignment:
| Q |
106 |
aggatcataacataatacttagttgcattatacgacaggaaccagaaataaaataaggtaggtactaagattttagttaaagaaaggaaccagtgcgaaa |
205 |
Q |
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| T |
12106792 |
aggatcataacataatacttcgttgcattatacgacaggaaccagaaacaa-----ggcaggtactaaggttttagttaccgaaaggaaccagtgagaaa |
12106698 |
T |
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| Q |
206 |
tcagatcctaaaagagtagagaaccaaaacccttctagcggatataga |
253 |
Q |
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| T |
12106697 |
tcacatcgtaaaagagtagagaacc--aacccttctagcagatataga |
12106652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 1454254 - 1454313
Alignment:
| Q |
280 |
tcatctacatcagatatcaaccggctcaatcaagataatgactgtaatgcctaagtgaat |
339 |
Q |
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| T |
1454254 |
tcatctacatcagatctcaactggctcaatgaagataatgattgtaatacgtaagtgaat |
1454313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 339
Target Start/End: Complemental strand, 12106612 - 12106550
Alignment:
| Q |
277 |
ttctcatctacatcagatatcaaccggctcaatcaagataatgactgtaatgcctaagtgaat |
339 |
Q |
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| T |
12106612 |
ttctcatctacatcagatctcaactggcttaatcaagataataaatgcaatgcctgagtgaat |
12106550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 32143371 - 32143298
Alignment:
| Q |
17 |
acaaaatacaccactttctgttatactcactcaataacagaaagtatattcaataaattttataacgtcgaaaa |
90 |
Q |
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| T |
32143371 |
acaaaatacaccactttctgttatactcatccaataacagaaagtatattcaataaaatttataccgtcgaaaa |
32143298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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