View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1860_low_20 (Length: 357)
Name: NF1860_low_20
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 350
Target Start/End: Complemental strand, 38485084 - 38484743
Alignment:
| Q |
9 |
ttcaaccacagcgcatctcctgaactcgtacttacatatctttctccaaagcctcctatcatgagaatcaactagttctttagcctcgcttaaagccagt |
108 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38485084 |
ttcaaccacagcgcatctcctgaactcatacttacatatctttctccaaagcctcctatcatgagaatcaactagttctttagcctcgcttaaagccagt |
38484985 |
T |
|
| Q |
109 |
agcaactcattgcagagaagaaaacacggccaacgaataaccctaacattccaagcattgtttggcagctccagcagctcaacctctttatcagaaatga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38484984 |
agcaactcattgcagagaagaaaacacggccaacgaataaccctaacattccaagcattgtttggcagctccagcagctcaacctctttatcagaaatga |
38484885 |
T |
|
| Q |
209 |
tatcttcctctctaaaggacataattatctcgttccataacaaagcaaatttcttggcatcagcctggttagaatcgagcttcttaaaaggatgaccaag |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38484884 |
tatcttcctctctaaaggacataattatctcgttccataacaaagcaaatttcttggcatcagcctggttagaatcgagcttcttaaaaggatgaccaag |
38484785 |
T |
|
| Q |
309 |
tccataccttagcttcatcctatgaattgcatccctatgctt |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38484784 |
tccataccttagcttcatcctatgaattgcatccctaagctt |
38484743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 78 - 342
Target Start/End: Complemental strand, 30119411 - 30119147
Alignment:
| Q |
78 |
aactagttctttagcctcgcttaaagccagtagcaactcattgcagagaagaaaacacggccaacgaataaccctaacattccaagcattgtttggcagc |
177 |
Q |
| |
|
|||||||||||| |||| || | ||| || || ||||| ||||||||||||||||| |||||||||||||||| ||||||||||| || | ||||||| |
|
|
| T |
30119411 |
aactagttctttggcctgactgagagcaagcagtaactcgttgcagagaagaaaacatggccaacgaataacccgaacattccaagagttctgtggcagc |
30119312 |
T |
|
| Q |
178 |
tccagcagctcaacctctttatcagaaatgatatcttcctctctaaaggacataattatctcgttccataacaaagcaaatttcttggcatcagcctggt |
277 |
Q |
| |
|
|||||||||||||||||| | ||||| || ||||| ||||| ||||| |||| ||||||||||||||||| ||||||||| || ||||| ||| |||||| |
|
|
| T |
30119311 |
tccagcagctcaacctctctgtcagagataatatcctcctccctaaaagacaaaattatctcgttccatatcaaagcaaacttgttggcctcaacctggt |
30119212 |
T |
|
| Q |
278 |
tagaatcgagcttcttaaaaggatgaccaagtccataccttagcttcatcctatgaattgcatcc |
342 |
Q |
| |
|
|||| ||||||||| | | || ||||||| |||||||| ||||||| |||||| || |||||| |
|
|
| T |
30119211 |
tagactcgagcttcctgtagggccgaccaagcccatacctgagcttcaacctatggatggcatcc |
30119147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University