View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_low_21 (Length: 356)
Name: NF1860_low_21
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 45252899 - 45253216
Alignment:
| Q |
16 |
tcgtcatgattaagtacaacaatttaagaattttgaattttgaagagtatatatatatttaaggaaggaagtgaggtaatgaatgggttagttagatgat |
115 |
Q |
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| T |
45252899 |
tcgtcatgattaagtacaacaatttaagaattttgaag-----agtatatatatatatttaagaaagaaagtgaggtaatgaatgggttagttagatgat |
45252993 |
T |
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| Q |
116 |
ggaagatggtagtacattctcgtcggcgaagatatccgtttggtgggacatagaaaactgtcaagtcccacgatacttcaacgacgctaattccatcgct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45252994 |
ggaagatggtagtacattctcgtcggcgaagatatccgtttggtgggacatagaaaactgtcaagtcccacgatacttcaacgacgctaattccatcgct |
45253093 |
T |
|
| Q |
216 |
caaaatatcaccaccgctctcttcaactccaacttccatggcccactttccatttcatcttacggtgacaccactcgcatcccctctcacgttcaacacg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45253094 |
caaaatatcaccaccgctctcttcaactccaacttccatggcccactttccatttcctcttacggtgacaccactcgcatcccctcccacgttcaacacg |
45253193 |
T |
|
| Q |
316 |
cgctttcttccaccggcatttcc |
338 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
45253194 |
cgctttcttccaccggcatttcc |
45253216 |
T |
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