View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_low_23 (Length: 349)
Name: NF1860_low_23
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 333
Target Start/End: Original strand, 42077802 - 42078127
Alignment:
| Q |
10 |
attattcttttcttctaaaagtgatacatggcatgtgcgagactaat--ctatatactaaaattatgttattctaataatatataagtcgtaccagaatg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42077802 |
attattcttttcttctaaaagtgatacatggcatgtgcgagactaatatctatatactaaaattatgttattctaataatatataagtcgtaccagaatg |
42077901 |
T |
|
| Q |
108 |
tacggatggggtttcaacctaaagctattaggagaagtaataatggttgggtgcttgaataaaggaagaaaattgatgcaagggattatatgaaatggct |
207 |
Q |
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|| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42077902 |
tatggatggggttacaacttaaagctattaggagaagtaataatggttgggtgcttgaataaaggaagaaaattgatgcaagggattatatgaaatggct |
42078001 |
T |
|
| Q |
208 |
cgtataacacacttgtgcagttaagggacaaaactgatgcaatggaattggaggggaaaggctcgtgtaatttaaactagtggaaggaaaaatacctatg |
307 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42078002 |
cgtataacacacctgtgcagttaagggacaaaactgatgcaatggaattggaggggaaaggctcgtgtaatttaaactagtggaaggaaaaatacctatg |
42078101 |
T |
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| Q |
308 |
agagaattcagataggtggttaatgt |
333 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
42078102 |
agagaattcagataggtggttaatgt |
42078127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 333
Target Start/End: Original strand, 41943371 - 41943696
Alignment:
| Q |
10 |
attattcttttcttctaaaagtgatacatggcatgtgcgagactaat--ctatatactaaaattatgttattctaataatatataagtcgtaccagaatg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41943371 |
attattcttttcttctaaaagtgatacatggcatgtgcgagactaatatctatatactaaaattatgttattctaataatatataagtcgtaccagaatg |
41943470 |
T |
|
| Q |
108 |
tacggatggggtttcaacctaaagctattaggagaagtaataatggttgggtgcttgaataaaggaagaaaattgatgcaagggattatatgaaatggct |
207 |
Q |
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|| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41943471 |
tatggatggggttacaacttaaagctattaggagaagtaataatggttgggtgcttgaataaaggaagaaaattgatgcaagggattatatgaaatggct |
41943570 |
T |
|
| Q |
208 |
cgtataacacacttgtgcagttaagggacaaaactgatgcaatggaattggaggggaaaggctcgtgtaatttaaactagtggaaggaaaaatacctatg |
307 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41943571 |
cgtataacacacatgtgcagttaagggacaaaactgatgcaatggaattggaggggaaaggctcgtgtaatttaaactagtggaaggaaaaatacctatg |
41943670 |
T |
|
| Q |
308 |
agagaattcagataggtggttaatgt |
333 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
41943671 |
agagaattcagataggtggttaatgt |
41943696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 333
Target Start/End: Original strand, 10344990 - 10345315
Alignment:
| Q |
10 |
attattcttttcttctaaaagtgatacatggcatgtgcgagactaat--ctatatactaaaattatgttattctaataatatataagtcgtaccagaatg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10344990 |
attattcttttcttctaaaagtgatacatggcatgtgcgagactaatatctatatactaaaattatgttattctaataatatataagtagtaccagaatg |
10345089 |
T |
|
| Q |
108 |
tacggatggggtttcaacctaaagctattaggagaagtaataatggttgggtgcttgaataaaggaagaaaattgatgcaagggattatatgaaatggct |
207 |
Q |
| |
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|| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10345090 |
tatggatggggttacaacttaaagctattaggagaagtaataatggttgggtgcttgaataaaggaagaaaattgatgcaagggattatatgaaatggct |
10345189 |
T |
|
| Q |
208 |
cgtataacacacttgtgcagttaagggacaaaactgatgcaatggaattggaggggaaaggctcgtgtaatttaaactagtggaaggaaaaatacctatg |
307 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10345190 |
cgtataacacacttgtgcagttaaaggacaaaactgatgcaatggaattgaaggggaaaggctcgtgtaatttaaactagtggaaggaaaaatacctatg |
10345289 |
T |
|
| Q |
308 |
agagaattcagataggtggttaatgt |
333 |
Q |
| |
|
||| |||||||||||||||||||||| |
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| T |
10345290 |
agaaaattcagataggtggttaatgt |
10345315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 333
Target Start/End: Original strand, 15990536 - 15990864
Alignment:
| Q |
10 |
attattcttttcttctaaaagtgatacatggcatgtgcgagactaat--ctatatactaaaattatgttattctaataatatataagtcgtaccagaatg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
15990536 |
attattcttttcttctaaaagtgatacatggcatgtgtgagactaatatctatatactaaaattatgttaatctaataatatataagtcgtaccagaatg |
15990635 |
T |
|
| Q |
108 |
tacggatggggtttcaacctaaagctattaggagaagtaataatggttgggtgcttgaataaaggaagaaaattgatgcaaggga--ttatatgaaatgg |
205 |
Q |
| |
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|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
15990636 |
tagggatggggttacaacctaaagctattaggagaagtaataatggttgggtgcttgaataaaggaagaaaattgatgcaaatgattttatatgaaatgg |
15990735 |
T |
|
| Q |
206 |
ctcgtataacacacttgtgcagttaagggacaaaactgatgcaatggaattggaggggaaaggctcgtgtaatttaaactagtggaagg-aaaaatacct |
304 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15990736 |
ctcgtataacacacttgtgcagttaaggaacaaaactgatgcaatccaattggaggggaaaggctcgtgtaatttaaactagtggaaggaaaaaatacct |
15990835 |
T |
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| Q |
305 |
atgagagaattcagataggtggttaatgt |
333 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
15990836 |
atgagagaattcagataggtggttaatgt |
15990864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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