View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_low_24 (Length: 347)
Name: NF1860_low_24
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_24 |
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| [»] scaffold0026 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 25816816 - 25816479
Alignment:
| Q |
1 |
tccattccctacattaatatgtcatggagacacatcatcttatggtactaaacaaaacataagggttatataacacactaaaacaaaaagacaagacaaa |
100 |
Q |
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| T |
25816816 |
tccattccctacattaatatgtcaaggagacacatcatcttgtggtactaaacaaaacataagggttctataacacgctaaaacaaaaagacaagacaaa |
25816717 |
T |
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| Q |
101 |
agatagattctgttaagttacatgttgttcaagctcgagactttttcaccttattccctttactccctctactactgttatgtgcagcatacaatgtatt |
200 |
Q |
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| T |
25816716 |
agatagattctgttaagttacatgttgttcaagctcgagactttttcaccttattccctttactccctctactactgttatgtgtagcatgcaatgtatt |
25816617 |
T |
|
| Q |
201 |
ctgtaaaccacttcctttaccatgttccatatataaattgagccaattctccaccaacatttccc--tcacacaagcaacatgcaaattgtaact---ct |
295 |
Q |
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| T |
25816616 |
ctgtaaaccacttcctttaccatgttccatatataaattgagccaattctccaccaacatttccctataacacaagcaacatgcaaattgtaactcgacc |
25816517 |
T |
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| Q |
296 |
tataactccagctacgtccttttcttccacaacggtga |
333 |
Q |
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| T |
25816516 |
tataactccagctacgtccttttcttccacaacggtga |
25816479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 210 - 333
Target Start/End: Complemental strand, 25802564 - 25802429
Alignment:
| Q |
210 |
acttcctttaccatgttccatatataaattgagccaattctccaccaacatttccctcacacaagcaacatgcaaattgtaactct------------ta |
297 |
Q |
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| T |
25802564 |
acttcctttaccatgtcccatatataagttgtaccaattttccaccagcatttccctcacacaggccacatgcaaattgtaactcttacagttcgatcta |
25802465 |
T |
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| Q |
298 |
taactccagctacgtccttttcttccacaacggtga |
333 |
Q |
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| T |
25802464 |
taactccagctacgtccttttcttccgcaacggtga |
25802429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 108672 - 108759
Alignment:
| Q |
210 |
acttcctttaccatgttccatatataaattgagccaattctccaccaacatttccctcacacaagcaacatgcaaattgtaactctta |
297 |
Q |
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| T |
108672 |
acttcctttaccatgtcccatatataagttgtaccaattttccaccagcatttccctcacacaagccacatgtaaattgtaactctta |
108759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Original strand, 108770 - 108807
Alignment:
| Q |
296 |
tataactccagctacgtccttttcttccacaacggtga |
333 |
Q |
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| T |
108770 |
tataactccagctacgtgcttttctcccacaacggtga |
108807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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